F08148

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08148

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08148

Determination of introduced cDNA(s)

  • RAFL09-70-E12 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-E12 - Resource: pda08700

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-70-E12 - full reading 
    ATTCTTCACT AAATGTTTGA GATCTATCCG TCACACTCCA GAGGTTAAAC 
    TCAGTCATCT GTCTTTGGGG AGGACAAGCA AGAACCTCAC CGACGATTCC 
    ATACCAAACA AATTCCCGAT CTGGAAACAA CTGACCTGTG AAGGTGAAGT 
    GTATCGCTGG AAATGGCGGT GGCCTTCCGT GGAGGCCGGG GAGGCGTCGG 
    ATCCGGCCAA TCTACCGGAC TTCGTAGTTT CTTCTCCTAC CGGATCTTTA 
    TCTCCGCTTT GTTCTCTTTT CTCTTCCTCG CCACTTTCTC CGTCGTTCTT 
    AACTCCTCTC GTCATCAGCC TCATCAGGAT CATACATTGC CGAGTATGGG 
    CAACGCATAT ATGCAGAGGA CGTTTTTGGC TTTGCAATCG GATCCATTGA 
    AAACTAGGTT GGATCTGATA CACAAGCAAG CCATTGATCA TTTGACACTG 
    GTGAATGCGT ATGCTGCTTA CGCTAGGAAG CTAAAGCTTG ATGCTTCTAA 
    GCAGCTTAAG CTCTTCGAAG ATTTGGCTAT CAACTTCTCG GATTTGCAGT 
    CAAAACCTGG TTTGAAATCT GCTGTGTCTG ATAATGGTAA TGCTCTTGAG 
    GAGGATTCGT TTAGGCAGCT TGAGAAAGAA GTGAAGGATA AGGTGAAGAC 
    AGCGAGGATG ATGATCGTTG AGTCTAAAGA GAGTTATGAT ACACAGCTTA 
    AAATCCAGAA GTTGAAAGAT ACAATCTTTG CTGTCCAAGA ACAGTTGACA 
    AAGGCTAAGA AAAACGGTGC GGTTGCTAGC TTGATTTCAG CCAAGTCGGT 
    TCCTAAAAGT CTTCATTGTT TGGCCATGAG GCTTGTAGGA GAGAGGATCT 
    CTAATCCTGA GAAGTACAAG GATGCTCCAC CTGACCCAGC CGCAGAGGAT 
    CCAACTCTTT ACCACTATGC GATTTTCTCT GATAATGTCA TTGCTGTGTC 
    TGTTGTGGTG AGATCGGTTG TGATGAACGC TGAGGAGCCA TGGAAGCATG 
    TCTTCCATGT GGTGACAGAT CGGATGAATC TCGCAGCCAT GAAGGTGTGG 
    TTTAAGATGC GTCCTTTGGA CCGTGGTGCC CATGTTGAGA TTAAATCCGT 
    GGAGGATTTC AAGTTCTTAA ACTCTTCCTA TGCGCCGGTC TTGAGGCAGC 
    TTGAGTCTGC CAAGTTGCAG AAGTTTTACT TTGAGAATCA AGCTGAGAAC 
    GCAACTAAAG ATTCACATAA CCTCAAGTTC AAGAACCCCA AGTATCTCTC 
    GATGTTGAAC CATCTCAGAT TTTACTTACC AGAGATGTAT CCGAAGCTGA 
    ATAAGATTTT GTTCTTGGAC GATGATGTTG TGGTGCAGAA AGACGTGACT 
    GGTTTATGGA AAATCAACTT GGATGGCAAG GTGAATGGAG CCGTTGAGAC 
    ATGTTTTGGT TCTTTTCATC GATATGGTCA ATACTTAAAC TTCTCTCATC 
    CTTTGATCAA AGAGAACTTT AACCCCAGTG CCTGTGCTTG GGCCTTTGGA 
    ATGAACATAT TCGATCTCAA TGCCTGGAGA CGCGAGAAGT GCACCGATCA 
    ATACCATTAC TGGCAGAACC TGAATGAAGA CAGAACTCTC TGGAAATTGG 
    GAACTCTACC TCCGGGATTG ATCACATTCT ATTCAAAGAC GAAATCATTG 
    GACAAATCAT GGCATGTACT TGGGTTAGGC TATAACCCGG GAGTGAGCAT 
    GGACGAAATC AGAAATGCAG GAGTGATTCA TTACAATGGA AACATGAAAC 
    CGTGGCTAGA CATTGCGATG AACCAATACA AGTCTCTCTG GACTAAATAT 
    GTTGATAACG AAATGGAGTT TGTGCAGATG TGCAATTTTG GTCTCTAAAG 
    AGAGAACGAT GAAAACAAAC AAACCGGAAA GAGGAAAAAA TAGGGAGAAG 
    AGGTAACCTC GGATCGATGT GTTTCTGTCT TTCTCGGCAT TCTTTAACTG 
    ATGATACGTT TATCTTTATA TAGGGTTACA AAAAAAAAGA AGCATTTTGC 
    TTGTTATTTC TGTCATAGTT TTGGTCTTTA TTTTTATTTT GTAAACTCTT 
    CACAGCAATA TGTTCTCCCA AGCTACAATG TCTTGTTGTC TCT

    Gene models with high sequence identity

    1. AT3G02350.1 [+] show detail - galacturonosyltransferase 9
      E-value: 0; Score: 99.95

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    Gene3D no description 1.3e-63
    HMMPfam Glycosyl transferase, family 8 2.9e-70
    superfamily Nucleotide-diphospho-sugar transferases 1.9e-66

    See the detailed result >

    AT3G02350.1

    Model type
    Protein coding
    Short Description
    galacturonosyltransferase 9
    Curator Summary
    Encodes a protein with putative galacturonosyltransferase activity.
    Computational Description
    galacturonosyltransferase 9 (GAUT9); CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 8 (InterPro:IPR002495); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferases superfamily protein (TAIR:AT3G25140.1); Has 1426 Blast hits to 1422 proteins in 244 species: Archae - 0; Bacteria - 444; Metazoa - 141; Fungi - 7; Plants - 818; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR