F08311

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08311

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08311

Determination of introduced cDNA(s)

RAFL09-11-O13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-11-O13 - Resource: pda01702

full reading [+] show sequence

GCACTCGCCA TGGTGTCTCA TCTTCAATGT ATGGCATCCA CATTGTTTAC 
TTGAGGTACA AGCAAAACGT CTAAGCTCGT CGACCTCCTC TTAATGGCTT 
CAAGTTCAAC TTCATTCCCG TTAACCACCG CGCCACCGCA GGGTGTCAGG 
TTTAACCGGA GAAAACCGAG GTTAACCGTG TGGGCTAAGC AAACGGCGTT 
TCAACTCGGG AAAACGAAGG GTGATGATGA CTCGGAGGGG AAACAAAAAG 
GGAAGAACCC GTTCCAGTTT GATTTCGGTA AGTTACCGGA CATGAAGTCA 
CTGATACCGG TTGTGACGAA TCCTTCTACC GGTTTAGTGT TTGGTAATAA 
CAGAAAGAAA GATCCTGGTA CTATTTTTGT GGCTGGTGCT ACGGGACAAG 
CTGGTATACG CATAGCTCAA ACGCTCTTAC AACGAGGATT CAGTGTTCGA 
GCCGGTGTTC CTGACCTTGG AGCTGCCCAG GACCTAGCTC GTGTCGCGGC 
TACTTACAAG ATTTTATCAA ATGATGAAGT CAAGAGGCTA AACGCAGTTC 
AATCCCCCTT CCAAGACGCT GAATCAATAG CAAAAGCGAT TGGAAACGCA 
ACCAAAGTTG TTGTTACGGT CGGGGCAACA GAGAATGGTC CGGACGCCCA 
AGTTTCGACC TCAGACGCAT TGCTCGTGGT CCAAGCAGCT GAGCTAGCCG 
GCGTAAGCCA CGTGGCGATA GTCTACGACG GCACCATCAG CGGGTCCACA 
TACAACGTGC TCGACGGGAT TACTTCGTTT TTCGGCAATC TTTTCGCAAA 
ATCTCAGCCA TTGACTATCT CTGACCTCAT CGAGAAAGTA GCTCAAACCG 
ACGTGGCCTA CACACTCATA AAGACGAGTT TGACGGAGGA TTTCTCTCCG 
GAGAAAGCTT ATAACGTCGT CGTTTCAGCT GAAGGGAGTA ACAGCGGCAG 
TGGCAGTAGT TCGTCCGAGG CCTACAAAGT AATGTAATGT TCCGAAGTTG 
AAGATTGCGT CGCTGGTTGC AGACATTTTT GCGAATACGG CCGTGGCAGA 
AAATAAGGTG GTGGAAGTTT CTACAGATCC ATCAGCACCA TCGCGGCCAG 
TGGACGAGCT TTTCAGTGTA ATCCCGGAAG ATGGGAGGAG AAAAGTGTAC 
GCAGATGCGA TCGCAAGGGA AAGAGCAGAG GAAGAAGCTA AAGTTGCAGC 
TGACAAAGCT CGAGAGGCAG CAGAAGCAGC GAAAGAGTTT GAGAAGCAAA 
TGCAAAAGCT CTCTGAGAAA GAAGCAGAAG CTGCAAGCTT AGCTGAGGAT 
GCGCAGCAGA AAGCAGATGC CGTGGGAGTC ACAGTGGACG GTTTATTTAA 
CAAGGCGAAA GATATCAGCT CAGGTCTCTC CTGGAATAAA CTCGGCTCTC 
AGTTCGCAAC TGCGATTCAG AACGCTTCAG AGACGCCTAA AGTACAGGTT 
GCTACGGTCA GAGGACAAGC AAAAGCGAGA AACTTGCCAC CCAAGAAAGC 
AGTGGTGAAG CAGAGACCAT CATCTCCGTT TGCATCCAAA CCGAAAGAAG 
AACGTCCGAA GAAGCCGGAG AAAGAGGTGA GGAAAGTGTT CGGAGGATTG 
TTTAAGCAAG AGACCATCTA CATCGACGAT GATTGAAAAG GCCATATGCG 
ATGTCCTTTT GAAGTTCCGT ACAGTTTCCT TTTTTCTCTT TCCTTCTGTT 
TCAAGTTAAA ATTCTGTAAT CGTATGACAA AATTATACAT AAAAAACCAT 
CATTCTCTCT CT

Gene models with high sequence identity

AT3G46780.1 [+] show detail - plastid transcriptionally active 16
E-value: 0; Score: 99.43

InterPro Scan Digest

Program	Description	E-value
Gene3D	NAD(P)-binding domain	1.5e-11
Coil	coiled-coil	0
Coil	coiled-coil	0
superfamily	NAD(P)-binding domain	4.5e-12
HMMPfam	NmrA	2.2e-08

See the detailed result >

AT3G46780.1

Model type: Protein coding
Short Description: plastid transcriptionally active 16
Computational Description: plastid transcriptionally active 16 (PTAC16); FUNCTIONS IN: binding, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), NmrA-like (InterPro:IPR008030); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G18890.1); Has 1243 Blast hits to 1093 proteins in 359 species: Archae - 5; Bacteria - 555; Metazoa - 73; Fungi - 75; Plants - 168; Viruses - 22; Other Eukaryotes - 345 (source: NCBI BLink).
Link: InterPro Scan - TAIR