F08629

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08629

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08629

Determination of introduced cDNA(s)

  • RAFL09-83-J05 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-83-J05 - Resource: pda09953

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-83-J05 - full reading 
    AATCCTCTGT TTCTTCTTCT TCATTTTAAG CTTCAGGGTC ATTTCTGTTT 
    CTGCACAACA AACTTGTGAC AACACTGCTG GTAGTTTCAA ACCCAATAGT 
    ACTTATGACA ACAACCGTCG TCTCCTCCTC TCTACCTTCG CCTCTAACGT 
    CACGGCTCAG AACGGCTACT TCAATGGTTC GTTCGGGCTT GGTACAGACA 
    GAGTCTACGC CATGGGGATG TGCGCTCCAG GTGCTGAACC TGATGTTTGC 
    TCCAACTGTA TTAAGAACAC AGCAGAGGGT TTACTACAGA TCTGTCTAAA 
    CCAGACGGAC GGTTTCTCAT GGTCTGGTGA AGAAACCCTT TGCCTTGTTC 
    GTTACTCTAA CAAATCCTTC TCCGGGCTAC TTGGCTTGGA GCCGTCTAAT 
    GATTTCTTCA ATGTAAACGA AATAAGAAAA GAAGACCAGA AGGAATTTGA 
    TAGTGTGTTT GATGAGTTAA TGTTTCGTAC AATCCAAGGA GCATCTTCAT 
    CGGTGAGAAA CAATTCTAAT TCGTTATCAT TGTCTGGTAA ATATTATGCA 
    AAGGATGTAG CTCCTGAACC GGTTTACGGG AACATATCGG TGGTGATGCA 
    ATGCACTCCA GATGTTTCTT CAAAGGATTG TAATCTTTGT CTTGAGAGAA 
    GTCTTGATTT CTATAAGAAA TGGTACAATG GGAAGAGAGG CACCATTATA 
    TTGCGGCCAA GTTGCTTTTT CCGGTGGGAA TTGTATACTT TCTTTGGTGC 
    TTTTGATAGT ATTAATGCTA GACACCCACC GCCTCCTCCA CGCCCGCTTT 
    CACCGCCCCC TTTAAAGACG CCTTCTGTAA CCAACCAAAC CAATATTACC 
    AAGAAGAATG ATAGTAGAAT CTCAGGAGGA ACTATCGCGG CGATAGTCGT 
    TGTAGTTGTT GTTACAATAA TATTGATTGT TGTAGGCTTG GTTATATGCA 
    AGAGAAGAAA GCAAAAGCAA GAAATTGAAC TTCCAATCGT TTTAAATGAA 
    GCGGAATCTG TTCAGTTTGA TTTAAAGACA ATTGAAGCAG CAACGGGCAA 
    CTTTTCTGAG CATAACAAGC TTGGTGCAGG TGGATTTGGT GAAGTTTACA 
    AGGGTATGCT TTTGAATGGG ACTGAAATTG CGGTAAAAAG ATTGTCAAAA 
    ACATCAGGAC AAGGTGAAAT AGAGTTCAAG AACGAGGTGG TTGTTGTTGC 
    AAAGCTTCAA CACATAAATC TTGTTAGACT TCTCGGGTTT TCGCTCCAAG 
    GAGAAGAGAA GTTACTCGTC TATGAATTTG TTCCAAACAA AAGTCTCGAT 
    TATTTCCTTT TTGACCCTAA CAAGAGAAAT CAGTTGGACT GGACAGTGAG 
    ACGCAACATC ATCGGTGGGA TTACTCGAGG AATTCTATAT CTTCATCAAG 
    ATTCACGGCT CAAAATCATA CATCGTGACC TCAAAGCGAG TAACATTCTC 
    TTAGATGCGG ATATGAACCC GAAAATTGCT GATTTCGGAA TGGCAAGGAT 
    CTTTGGAGTG GACCAAACTG TAGCCAATAC CGCAAGAGTA GTTGGAACCT 
    TTGGTTACAT GTCTCCTGAG TATGTGACAC ATGGCCAATT CTCAATGAAA 
    TCAGACGTCT ATAGTTTTGG AGTATTGATT CTTGAGATCA TTAGTGGCAA 
    AAAGAATAGC AGCTTCTATC AGATGGATGG CTTAGTTAAC AATTTAGTCA 
    CATATGTCTG GAAACTTTGG GAGAACAAAA CAATGCATGA GCTCATAGAT 
    CCCTTTATTA AAGAAGATTG TAAAAGCGAT GAAGTCATTA GATACGTTCA 
    TATTGGGCTG TTATGTGTTC AAGAAAATCC TGCAGATCGA CCAACAATGT 
    CTACGATTCA CCAAGTGCTC ACAACCAGCT CAATTACTCT ACCTGTGCCT 
    CAGCCACCTG GATTTTTCTT CAGGAACGGA CCAGGATCGA ACCCATCAAG 
    CCAGGGAATG GTGCCTGGTC AATCGAGCAG CAAGTCTTTT ACTAGTTCTG 
    TAGATGAAGC AACAATCACC CAAGTTAATC CTCGTTGAAA TATCTAGCAT 
    GTTCTGTTTT TGTTTTTTGA TGTTTCCATA TAGAAATAAG TTTTATAGGG 
    GTCACAATAA AAAAAAATAA AGGGTTTGAA CATAAATTTG TAAGTTTAAG 
    GGGGTTAAAT TAGGAGAAAA ATAAACAATA TTAT

    Gene models with high sequence identity

    1. AT4G23250.1 [+] show detail - kinases;protein kinases
      E-value: 0; Score: 99.26

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 1.1e-34
    HMMSmart Tyrosine-protein kinase, catalytic domain 1e-35
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 7.8e-47
    HMMPfam Protein of unknown function DUF26 5.1e-13
    HMMPfam Protein of unknown function DUF26 3e-14
    superfamily Protein kinase-like domain 2.1e-81
    HMMPanther SERINE/THREONINE RECEPTOR-LIKE PROTEIN KINASE 4.5e-280
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 4.5e-280
    ProfileScan Protein kinase, catalytic domain 38.266
    Gene3D no description 7.6e-23
    Gene3D no description 4.3e-51

    See the detailed result >

    AT4G23250.1

    Model type
    Protein coding
    Short Description
    kinases;protein kinases
    Computational Description
    EMBRYO DEFECTIVE 1290 (EMB1290); FUNCTIONS IN: protein kinase activity, kinase activity; INVOLVED IN: protein amino acid autophosphorylation, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Concanavalin A-like lectin/glucanase (InterPro:IPR008985); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 18 (TAIR:AT4G23260.1); Has 121653 Blast hits to 119053 proteins in 4422 species: Archae - 98; Bacteria - 13672; Metazoa - 43987; Fungi - 10320; Plants - 35330; Viruses - 426; Other Eukaryotes - 17820 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR