F08815

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08815

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)
  • decreased width (PATO:0000599)
    (Seed::Shape::narrow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08815

Determination of introduced cDNA(s)

  • RAFL06-15-D17 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-15-D17 - Resource: pda03201

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-15-D17 - full reading 
    CATTATTACA CCACCGTTGG CCTCCGACGA CGGCTCAAGC CTATCTTCGT 
    CGCCGGCTTC TCCGATGGTT ACCAATCGCG TAGACGTCTT CTGGCACGAA 
    GGAATGCTCC GACACGACGC CGTAGAAGGC GTCTTCGACA CTGGATACGA 
    CCCTGGATTC CTCGACGTAT TGGAGAAGCA CCCGGAGAAC GCCGATCGCG 
    TCAGGAACAT GCTTTCGATT CTCCGACGCG GTCCCATCGC TCCTCATGTC 
    AATTGGTTTA CCGGTCTTCC AGCAATCGTT TCGGAGCTTC TAATGTTTCA 
    CACTTCAGAG TACATTGAGA AGCTAGTGGA GGCAGATAAA TCAGGAGAAA 
    GGTGTGAAAT TGCCGCAGGT ACTTTCATGA GCCCAGGCTC GTGGGAAGCT 
    GCTCTTCTTG CAGCTGGAAC AACTCTTTCA GCAATGCAAC ATATTCTTGA 
    TTGCCATGGG AAAATTGCAT ATGCTCTGGT ACGCCCACCA GGTCACCACT 
    CACAGCCTAC TCAGGCTGAT GGGTATTGCT TCCTCAACAA CGCTGCTCTT 
    GCTGTCAAGC TGGCATTGAA TTCGGGTTCT TGTTCCCGAG TTGCGGTTAT 
    TGACATCGAT GTACATTATG GAAATGGCAC AGCTGAAGGG TTTTATACAT 
    CTGATAAGGT TCTTACGGTG TCACTCCATA TGAACCATGG ATCATGGGGA 
    TCGTCCCACC CGCAGAAAGG GTCGATTGAT GAACTTGGTG AAGACGTGGG 
    ATTGGGTTAC AATCTGAATG TCCCTTTACC GAATGGCACG GGTGACCGGG 
    GATATGAATA TGCCATGAAT GAGCTGGTGG TTCCTGCAGT TAGAAGGTTT 
    GGACCCGATA TGGTTGTTCT CGTTGTTGGT CAAGACTCTA GCGCTTTTGA 
    TCCAAACGGG AGACAAAGCC TGACAATGAA TGGATACAGA AGGATTGGGC 
    AGATAATGAG GGGAGTTGCA GAGGAGCACA GCCATGGAAG GTTGCTTATG 
    GTGCAAGAAG GCGGGTATCA TGTAACATAT GCAGCTTACT GCCTCCACGC 
    CATGCTCGAA GGGGTGCTGA AGATTCCAGA ACCGCATCTA TCTGATCCGA 
    TCGCTTATTA TCCCGAAGAA GAAGCTAATG CTGTTGCTGC TGTGGAGTCA 
    ATCAAAACAT ATCACACCGA ATTTGTTCCA TTTCTCAGAG GAACTTGAAA 
    ATGGGACGTA TGAATGAGTT TATGTTATTC CTCGTTGTCT TGTGACCTTT 
    TGGAACACAG ATCCAAATCA ATCAGGTCAA ACCGTATATA TCAAAATACT 
    TGTTGATCAA ACTATCTTTT GTATGAAAAC TTATTCACAC G

    Gene models with high sequence identity

    1. AT1G08460.1 [+] show detail - histone deacetylase 8
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Histone deacetylase superfamily 6.9e-85
    HMMPanther HISTONE DEACETYLASE-RELATED 1.5e-237
    HMMPanther Histone deacetylase superfamily 1.5e-237
    FPrintScan Histone deacetylase superfamily 3.9e-14
    FPrintScan Histone deacetylase superfamily 3.9e-14
    FPrintScan Histone deacetylase superfamily 3.9e-14
    superfamily Arginase/deacetylase 3.7e-92
    HMMPfam Histone deacetylase superfamily 3.2e-78

    See the detailed result >

    AT1G08460.1

    Model type
    Protein coding
    Short Description
    histone deacetylase 8
    Computational Description
    histone deacetylase 8 (HDA08); CONTAINS InterPro DOMAIN/s: Histone deacetylase superfamily (InterPro:IPR000286); BEST Arabidopsis thaliana protein match is: histone deacetylase 5 (TAIR:AT5G61060.1); Has 9025 Blast hits to 8820 proteins in 1442 species: Archae - 223; Bacteria - 3178; Metazoa - 1474; Fungi - 641; Plants - 477; Viruses - 0; Other Eukaryotes - 3032 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR