F08816

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08816

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08816

Determination of introduced cDNA(s)

RAFL05-04-F24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-04-F24 - Resource: pda00835

full reading [+] show sequence

AACAAAGCAA AGCGTTGAAG AGAGAAGAAG AAGCAAAGAT ATAACCCCCA 
AAAGTATCAA TTAGTTTCCA TTTTCGCCGC TAAGATTCTG TTTTCGAACA 
TTTACACCCT CAAGAATCGC CGCCATGTGT GGAGGAGCTA TAATATCCGA 
TTTCATTCCA CCGCCGAGGT CTCGCCGTGT TACTAGCGAG TTTATTTGGC 
CGGATCTGAA GAAGAATTTG AAAGGATCGA AGAAAAGCTC GAAGAATCGT 
TCGAATTTCT TCGATTTTGA CGCTGAGTTC GAAGCTGATT TCCAAGGTTT 
CAAAGATGAT TCGTCTATCG ATTGCGATGA TGATTTCGAC GTCGGTGATG 
TTTTCGCCGA TGTGAAACCA TTCGTTTTCA CTTCGACTCC AAAACCCGCC 
GTCTCCGCCG CTGCGGAAGG TTCAGTTTTT GGTAAGAAAG TTACTGGCTT 
GGATGGGGAC GCTGAGAAAT CTGCAAATAG GAAGAGGAAG AATCAGTACC 
GAGGGATTAG GCAACGTCCT TGGGGAAAAT GGGCTGCTGA GATACGTGAT 
CCAAGGGAAG GTGCTAGAAT CTGGCTTGGA ACGTTCAAGA CAGCTGAGGA 
AGCTGCTAGA GCTTACGATG CTGCAGCGCG GAGAATCCGT GGATCTAAAG 
CTAAGGTGAA TTTCCCTGAA GAAAACATGA AGGCTAATTC TCAGAAACGC 
TCTGTGAAGG CTAATCTTCA GAAACCAGTG GCTAAACCTA ACCCTAACCC 
AAGTCCAGCT TTGGTTCAGA ACTCGAACAT CTCCTTTGAA AATATGTGTT 
TCATGGAGGA GAAACACCAA GTGAGCAACA ACAACAACAA CCAGTTTGGG 
ATGACAAACT CCGTTGATGC TGGATGTAAT GGGTATCAGT ATTTCAGCTC 
TGACCAGGGT AGTAATTCTT TCGATTGTTC GGAGTTTGGT TGGAGCGATC 
AAGCTCCGAT AACTCCCGAC ATCTCTTCTG CGGTTATCAA CAACAACAAC 
TCAGCTCTGT TCTTTGAGGA AGCCAATCCA GCTAAGAAGC TCAAGTCTAT 
GGATTTCGAG ACACCTTACA ACAACACTGA ATGGGACGCT TCACTGGATT 
TCCTCAACGA AGATGCTGTA ACGACTCAGG ACAATGGTGC AAACCCTATG 
GACCTATGGA GTATTGATGA AATTCATTCC ATGATTGGAG GAGTCTTCTG 
AAGAGATCCA GTTTCATGTA AATAAGGCTG CATGTTTGTG AGTTTCCCGC 
ATCGTTCGTT TATCAACCTC CAAAACTTTC TAATGTCTGT TACTTGCATC 
TTCTTCTGCT GTCTCTGTCT GTCTCTCTCA GGAGTTCCTG TTTGCATTGC 
GAGAAGCCAT GAGCCTCTAT CTTGAGGGTA GTTGTGATGA AGTTAAGTAG 
AGGCTTATTT TTAGGGGTTG TGGTAGTTTT TGTTTTAGTG AATCTTTTGA 
ATTCGTTTGT GTTTTGTTTT TGTTACTTTA TGCCCCAAAA CTCCTTTAAC 
ATTTGTCATA ATGTGTTTGA ACCTCTCATC TGTTTAATCA AATAAATCTT 
CTTTGTATGT T

Gene models with high sequence identity

AT1G53910.1 [+] show detail - related to AP2 12
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.3e-17
HMMSmart	Pathogenesis-related transcriptional factor/ERF, DNA-binding	2.1e-37
Gene3D	Pathogenesis-related transcriptional factor/ERF, DNA-binding	5.4e-24
superfamily	DNA-binding, integrase-type	2e-24
ProfileScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	24.395
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.2e-11
FPrintScan	Pathogenesis-related transcriptional factor/ERF, DNA-binding	1.2e-11

See the detailed result >

AT1G53910.1

Model type: Protein coding
Short Description: related to AP2 12
Curator Summary: encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description: related to AP2 12 (RAP2.12); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: related to AP2 2 (TAIR:AT3G14230.3); Has 6179 Blast hits to 5848 proteins in 260 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 6129; Viruses - 0; Other Eukaryotes - 44 (source: NCBI BLink).
Link: InterPro Scan - TAIR