F08836

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F08836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F08836

Determination of introduced cDNA(s)

  • RAFL09-09-E15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-09-E15 - Resource: pda05249

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-09-E15 - full reading 
    AGTCTGAAAA CTCTGTAGCT CTCTCACTTC AGCTTTCCAA TTAAAGGGAA 
    CAAAGCTTTG ATTTTTGCCG CAGTCAGAAG CATTACTTTG CAAGAACAAG 
    TGTGTAAACA AAGATGAGGA GCTCCCAAAA CGGCGGCGCA ATGGGTGGAC 
    GAGCTGCCGG AACCGGCGGA GGAGGACCGT CGGCTCCAGT TGACAAAGAA 
    GTTGACTACG CTCAGTACTT CTGTACTTAC TCCTTCCTAT ACCACCAGAA 
    GGATATGCTC TCCGACCGTG TCCGTATGGA TGCTTACTTC AACGCCGTCT 
    TCCAGAACAA ACATCACTTT GAGGGCAAGA CGTGGGCACC GGGAGTGGAA 
    TTCTTGCAAT TTGGTCAGCT CAAGCTGGTG CCAGGAAGGT TTATGCCGTT 
    GAAGCTACTA AGATGGCTGA TCATGCTCGT GCCCTTGTCA AAGCCAATAA 
    CCTTGACCAT ATTGTAGAAG TCATTGAAGG ATCTGTCGAG GATATTTCAT 
    TGCCTGAGAA AGTTGATGTA ATTATCTCGG AGTGGATGGG ATACTTCCTT 
    CTGCGGGAGT CCATGTTTGA TTCTGTGATT AGTGCTCGTG ACCGATGGTT 
    AAAGCCAACA GGTGTCATGT ACCCTAGTCA TGCTCGCATG TGGCTTGCAC 
    CCATCAAGTC CAATATAGCA GATCGGAAGA GGAATGATTT CGATGGGGCA 
    ATGGCAGACT GGCATAACTT TTCGGATGAG ATCAAAAGTT ACTATGGGGT 
    TGATATGGGA GTTTTAACAA AACCTTTTGC TGAAGAGCAA GAAAAGTATT 
    ACATACAGAC TGCTATGTGG AATGACTTGA ATCCACAACA AATCATAGGC 
    ACTCCCACAA TTGTCAAGGA GATGGATTGT TTGACAGCAT CTGTCAGTGA 
    AATCGAGGAA GTCAGATCAA ATGTAACGTC AGTTATCAAT ATGGAGCATA 
    CAAGGCTATG TGGTTTTGGT GGATGGTTCG ATGTTCAGTT CTCGGGGAGA 
    AAAGAAGACC CCGCACAGCA AGAAATCGAG TTGACCACAG CTCCAAGTGA 
    GCAGCACTGC ACGCACTGGG GACAACAGGT TTTCATTATG TCGAATCCTA 
    TAAATGTTGA GGAAGGTGAT AATCTGAATC TTGGTTTGTT AATGAGCCGG 
    TCCAAGGAAA ATCACCGACT AATGGAGATT GAGCTTAACT GTGAAATAAA 
    AGAAGCATCT GGTAACCCCA AAGAATCTTT CAAGAAGACT TACTTCATAG 
    AGTGATTGAT TGATTATAGA GAAGCTTTCC TTGGGGCTTG CTGGTTCTTG 
    TATCCCATGT ATGAACCCCA AATGTAATGT TTTATTGCTT CTTGCCTTTT 
    TTTTCTATGT AAACGAGATT GTTATACCAA TTTTCAATAG ATTTTTATAT 
    GGGTGATATA ATTTAT

    Gene models with high sequence identity

    1. AT1G04870.1 [+] show detail - protein arginine methyltransferase 10
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN ARGININE N-METHYLTRANSFERASE 2 3.4e-200
    HMMPanther PROTEIN ARGININE N-METHYLTRANSFERASE 3.4e-200
    Gene3D no description 1.6e-34
    Gene3D no description 5.2e-34
    Gene3D no description 0.00055
    superfamily S-adenosyl-L-methionine-dependent methyltrans 6.3e-45
    HMMPfam Skb1 methyltransferase 9.9e-13

    See the detailed result >

    AT1G04870.1

    Model type
    Protein coding
    Short Description
    protein arginine methyltransferase 10
    Curator Summary
    Encodes a type I protein arginine methyltransferase based on the At1g04870.2 gene model. PRMT10 can catalyze the asymmetric dimethylation of arginine 3 on histone 4 and can also methylate myelin basic protein in vitro. Mutants lacking PRMT10 flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.
    Computational Description
    protein arginine methyltransferase 10 (PRMT10); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: vegetative to reproductive phase transition of meristem; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Skb1 methyltransferase (InterPro:IPR007857); BEST Arabidopsis thaliana protein match is: protein arginine methyltransferase 6 (TAIR:AT3G20020.1); Has 1641 Blast hits to 1634 proteins in 326 species: Archae - 0; Bacteria - 17; Metazoa - 883; Fungi - 244; Plants - 262; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR