F09005

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09005

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09005

Determination of introduced cDNA(s)

  • RAFL06-82-F02 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-F02 - Resource: pda03825

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-F02 - full reading 
    GTTTGGAGAT AAGAAGTGGG AACTTGAATG GCTTCCTTAT CCACTTCCGT 
    TGTAGCTTCG GCTTCGTCGC GTTTATGGAA TCCTGCTGCC TCCAACGGCA 
    AGATTTGCGT TCCTTCTGCT TCGCTTTCTC TGCGTACGGG TTGTAGACGG 
    AGTTCGTCCT CTCTCACTTC TTCCGCTTCT TCGCAATTGC TTCATTGCTC 
    GTTTCTCTCG TCGCCTGTTT CCCTAGCGTC TCCATTTTCT GGTTTGTCCA 
    TTGCGTTTGA TCTCAGCAGT CAAACTAGTG GACTGAATGG CCAGAGACGC 
    AGAGGCCTTG TGGTTAGAGC TGGAAAAGCT GCTCTGTGTC AAACTAAGAG 
    AAGCAGATCA AGAAAATCTC TAGCTAGGAC TCATGGTTTC CGTAGAAGGA 
    TGAGGACCAC TAGCGGTAGA GCAACCATAA AGCGTCGACG TGCCAAGGGA 
    CGTTGGAACC TCTGTCCCAA GTCCAACCCT AGCAGCGGCA AACGGGCTTG 
    AAGTTTGTTT CTCTCTTCAC TCTATCTGTA ATCTTGTTTC ATGTGCTTTT 
    TTTCCACCAG AAGATACAAT GAGAAACATG GTTCGTTGAG CTCTTTTCTG 
    CGTTTTAACT CTCTTGCATC CTTGATTCGT TTATAAATCA ATGTTCTTGG 
    AATCCAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G29070.1 [+] show detail - Ribosomal protein L34
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L34 2.5e-10
    HMMTigr Ribosomal protein L34 0.00220000021756082
    BlastProDom Ribosomal protein L34 0

    See the detailed result >

    AT1G29070.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L34
    Computational Description
    Ribosomal protein L34; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, intracellular, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34 (InterPro:IPR000271); Has 615 Blast hits to 615 proteins in 261 species: Archae - 0; Bacteria - 556; Metazoa - 0; Fungi - 11; Plants - 33; Viruses - 0; Other Eukaryotes - 15 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR