F09301

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09301

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • hyponastic (PATO:0002329)
    (Cauline leaf::Shape::hyponastic)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09301

Determination of introduced cDNA(s)

  • RAFL06-84-B20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-84-B20 - Resource: pda03869

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-84-B20 - full reading
    ATCTGTTGGG TCGTTTCTTT GAAATCAAAA AAAAAAAATC TCTGTTTCTC 
    TGACACTCTC TCTCTCTGTT TCTACTTTCA AGATTCAAAT TTTTGTTCCC
    CTGATCCACT CGTCTTTGAA TTCTCATCAA GTCTTATATG TTTCTTGCCT
    ACTCTGATCT CTATCGGAAA CCCTAGATCC ATATCTTCTT GACTTGACAC
    TAGTTCACGA ATCACGATCT GCGGTTCCTG AAGCTGGTAA TGCTAGATCC
    CACCGAGAAA GTAATCGATT CAGAATCAAT GGAAAGCAAA CTCACATCAG
    TAGATGCGAT CGAAGAACAC AGCAGCAGTA GCAGTAATGA AGCTATCAGC
    AACGAGAAGA AGAGTTGTGC CATTTGTGGT ACCAGCAAAA CCCCTCTTTG
    GCGAGGCGGT CCTGCCGGTC CCAAGTCGCT TTGTAACGCA TGCGGGATCA
    GAAACAGAAA GAAAAGAAGA ACACTGATCT CAAATAGATC AGAAGATAAG
    AAGAAGAAGA GTCATAACAG AAACCCGAAG TTTGGTGACT CGTTGAAGCA
    GCGATTAATG GAATTGGGGA GAGAAGTGAT GATGCAGCGA TCAACGGCTG
    AGAATCAACG GCGGAATAAG CTTGGCGAAG AAGAGCAAGC CGCCGTGTTA
    CTCATGGCTC TCTCTTATGC TTCTTCCGTT TATGCTTAAC GAATTTTCTG
    GATCTTAAGT TTTAAGGTGA AATAATAATT AATTTTGTAG GATGTGTAAC
    GAATTAATGT GTAATTTTTG TATGCGTTTT TTTGGTGTTG TTTGAATTAA
    CTAAATTTTG AAATTTTTGT ATCTTGTTTA TGTGATCTCT GGTGAAGAAT
    GAATGAATGA ATGAAAGGTC AAAATGATTT TCTTCCGAAA AAAAAGAAAA
    AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT3G06740.1 [+] show detail - GATA transcription factor 15
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Glucocorticoid receptor-like (DNA-binding dom 1.1e-14
    HMMSmart Zinc finger, GATA-type 5.5e-14
    HMMPfam Zinc finger, GATA-type 2.3e-15
    ProfileScan Zinc finger, GATA-type 12.387
    PatternScan Zinc finger, GATA-type 0
    HMMPanther GATA TRANSCRIPTION FACTOR-RELATED 0.00037
    HMMPanther TRANSCRIPTION FACTOR GATA (GATA BINDING FACTO 0.00037
    Gene3D Zinc finger, NHR/GATA-type 1.1e-05

    See the detailed result >

    AT3G06740.1

    Model type
    Protein coding
    Short Description
    GATA transcription factor 15
    Curator Summary
    Encodes a member of the GATA factor family of zinc finger transcription factors.
    Computational Description
    GATA transcription factor 15 (GATA15); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 16 (TAIR:AT5G49300.1); Has 1479 Blast hits to 1431 proteins in 181 species: Archae - 0; Bacteria - 0; Metazoa - 80; Fungi - 586; Plants - 738; Viruses - 0; Other Eukaryotes - 75 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR