F09928

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F09928

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F09928

Determination of introduced cDNA(s)

  • RAFL09-97-M15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-97-M15 - Resource: pda17937

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-97-M15 - full reading 
    CCCGATCATC ATCATCGTCA TCTGCGTGTA AAACACACTC ACGCCATCGT 
    TGACGTCTCA GATCTTCACA TAAAAGCTTC TATTATCAAA CTCTCTTCCT 
    CACGGTAACC CTAACTATCT GTAATTTATC TCTCTACACT TTCTTCATCT 
    CTTAATCACC TTAATCATCT TAAGCTTTGT ATTTCTAGAT CCTTCTCCCA 
    AAACAACGAT TCGTGATCTC CGTTCTCATA GATCAGTTTC GGATTTGGAT 
    ATTTCTTAGG GATTTGTGTG AGATATTTTT AGAATTGTTT CGATTTAGGG 
    ATTTGTGTGA AGAAGATGGA TTTTCCAGAG AATTTGCCTT CAGATATAGG 
    AAGATTAGAG CAGATTGTTT CTCATTTCTT CCCAAAAGCA TTACACATAG 
    TTCTTAATTC CAGAATCCCT TCGTTGCAAT CTCGTGGTCG TACTCGTGAG 
    CGTTTATCAG GTCTTAACGT TAGAAAAAGT GACAAATGGT TTAATCTTGT 
    GATGGGAGAT CGTCCTGCTG CGTTGGAGAA ATTGCATTCT TGGCATAGGA 
    ATATTCTGGA TTCTATGATT ATTGATATCA TTCTTGTCCA TCCGATTTCA 
    AACGATAATT TGGATGATGA TGATGATCAT AGTGATTCTG TTGTTAGATC 
    AGCTGAGACT GTGATTGAGC GTTGGGTTGT TCAATATGAG AATCCTTTGA 
    TTATGTCTCC TCAGAGTTCT GACTCTGCAA CGCGTTACCA GAAGGTTTAC 
    AAGAAATCTA TCATTCTGTT GCGGTCTCTT TATGCACAGA CTCGGCTTCT 
    TCCTGCTTAT CGTGTCTCTA GGCAGCTGAG TTCTTCTCTT GCTTCTTCTG 
    GTTATGATTT GATTTACAAG GTTTCATCTT TCAGTGACAT ATTCTCTGGT 
    CCTGTGACGG AAACAATGAA AGAGTTTCGT TTTGCTCCTG TTGAAGTGCC 
    TCCTGGTCGT CTTTGTGCAT CGGTTACTTA CCGTTCTGAC TTATCTGATT 
    TTAATCTCGG TGCTCATATC ACATTGCCTC CGAGGATTAT AACTGATTAT 
    GTGGGAAGTC CTGCAACAGA TCCTATGAGG TTTTTCCCTT CTCCAGGGAG 
    AAGTGTTGAA GGCCATTCCT TTACTGGTAG AGCTGGTCGG CCTCCATTGA 
    CTGGTTCATC TGCAGAACGT CCGCATAGCT GGACTAGCGG CTTTCACAGA 
    CCTCCAGCTC AATTCGCAAC ACCGAACCAA TCTTTTTCGC CAGCTCAGTC 
    TCATCAGTTG TCACCTGGGT TACACGATTT CCACTGGTCA CGTACAGATG 
    CTTTTGGTGA CAATCACCAG CTTTCACCTC CCTTTTCACC ATCGGGTTCT 
    CCATCTACTC CAAGATACAT ATCTGGGGGT AACAGTCCGC GCATTAATGT 
    GAGACCAGGG ACTGCTCCAG TGACCATTCC TTCTTCAGCC ACGTTAAATA 
    GATACGTTTC ATCTAACTTC TCTGAGCCAG GTAGGAATCC ACTTCCTCCT 
    TTTTCCCCCA AAAGCACAAG ACGCTCCCCT TCATCGCAGG ACTCTTTGCC 
    TGGGATTGCG TTGTACAGGA GTTCTAGAAG CGGAGAGTCT CCTTCTGGAT 
    TAATGAACCA GTACCCTACT CAAAAGCTGT CAAAGGACAG CAAATACGAT 
    TCAGGCCGCT TCTCAGGAGT TCTGTCTTCG AGTGACTCAC CAAGATTCGC 
    GTTTTCTAGG AGCCCCAGTA GATTATCTTC CCAAGACGAC TTGGATGACC 
    CTGATTGTTC ATGCCCTTTT GATTTCGATG ATGTTGATGA GTCAGGACTT 
    CAGTACAGCC ATAGTCTTGA CCGGAGGAAA ACTTCAAGCT CTATATCGCA 
    GTCGCTACCT CTAGGGAGAA GATCATCACA GGACGCAGCG GTTGGTGTTC 
    TGGTTCACAT GCTGAAGACA GCACCACCAT TACGACAAGA CTCAAGCACT 
    TATATGGCGT CAATGTCTGG GGTTCAGAGA GAAGGTTCAG TGTCAGGTAC 
    AGAATCTGAA TTTTCGATGG CTCGTAGCAC ATCAGATGCA CTAGAGGAAC 
    TGAGAAACTA CAAACAGCTC AAAGACTTGC TTCTCTCCAA ATCCAAAAGT 
    GGGTCTGGAC CAACTCGCGT CCACTGAGCC AAATCAAAGA GCGATCAAGA 
    TATGAGTTAT CCGATGGTTG TTTGTAGATA TGAATTTGAT GACGAATACT 
    TAACTCTGTT GTATATTGCC AAAGAGCAAT CACGTTTTGG TTTCTGTAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT3G49590.1 [+] show detail - Autophagy-related protein 13
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT3G49590.1

    Model type
    Protein coding
    Short Description
    Autophagy-related protein 13
    Computational Description
    Autophagy-related protein 13; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 13 (InterPro:IPR018731); BEST Arabidopsis thaliana protein match is: Autophagy-related protein 13 (TAIR:AT3G18770.1); Has 1957 Blast hits to 674 proteins in 207 species: Archae - 0; Bacteria - 87; Metazoa - 293; Fungi - 173; Plants - 114; Viruses - 5; Other Eukaryotes - 1285 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR