F10034

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10034

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10034

Determination of introduced cDNA(s)

  • RAFL11-01-C09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL11-01-C09 - Resource: pdz88385

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL11-01-C09 - 5 prime EST 
    GATCTTGATA TCTTCACCGC CTGCCGATCT CTCTCAATCT CCGATCAACC 
    ATGAGCAAAG GTCCAGGACT CTTCACCGAT ATCGGCAAGA AAGCCAAAGA 
    TCTGTTGACG AGAGACTACA ATTCCGATCA GAAGTTCAGT ATCTCCACTT 
    ACAGTGCCTC CGGCGTGGCC CTTACGTCTA CTGCTCTGAA GAAAGGAGGA 
    GTTCATGCTG CTGATGTTGC CACCCAATAC AAGTACAAGA ATGCTTTGTT 
    TGATGTTAAA ATCGACACTG ATTCTAGTGT TTTGACAACA GTCACACTTA 
    CCGAGATCCT CCCATCAACA AAAGCCATTG CCTCCTTCAA AGTCCCTGAT 
    TATAATTCCG CCAAGCTCGA GGTGCAATAC TTCCACGACC ACGCAACAGT 
    TACCGCTGCT GCAGCTTTGA AACAAAACCC ACTAATTGAC ATAACAGCTA 
    CTCTTGGTTC GCCAGTCATC TCATTTGGTG CTGAAGCTGG ATATGACACA 
    ACCTCCAAAA CTTTCACCAA GTACAATGCC GGGATCAGTG TGACAAAACC 
    AGATGCTTGC CTCTCCATAA TATTGGGAGA CAAAGGANAC TCACT

    Gene models with high sequence identity

    1. AT5G67500.1 [+] show detail - voltage dependent anion channel 2
      E-value: 0; Score: 99.83

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL11-01-C09 - 3 prime EST 
    CAAGAAGAGT GCTTAATTAT AAAAGAAAGA TAAAAAAAAA ACCAAAACCG 
    AGCATATCCA AAAAAAGAAT TATCCGTCAA TTTCACTGCG GAACTATTTA 
    TTGATTCCAA TTAAACGTAA GGAAAAAAGG AGGAAAAAAA CGCTAACTCT 
    CACGTCCTGC CGTAGAGGAA ATCAACAATG AGAGCATACG AGAAAAGTAG 
    GAAGACTCAA GCAGGTCTGA TGTGAGTGTG TGTTCTCAAG GTTTGAGAGC 
    AAGAGAGAGA CCAAACCTTG GATGCTTTTC TAAAGCCTTA GTGTCATCTC 
    ACTGGAAACA GTCACTATTG ATCTGGGCAG GACCTCGTGC TGCAGAAGAG 
    CACCAATTGT GCCATGGTTG TTGAGCTTAG CTTTCACTGC AGTCGAATGA 
    TCAATCGCAT ACAATCCACC AACCGTTATC GTG

    Gene models with high sequence identity

    1. AT5G67500.2 [+] show detail - voltage dependent anion channel 2
      E-value: 0; Score: 99.31

    AT5G67500.1

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 2
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 2 (VDAC2); FUNCTIONS IN: voltage-gated anion channel activity; INVOLVED IN: response to bacterium, anion transport; LOCATED IN: in 7 components; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR

    AT5G67500.2

    Model type
    Protein coding
    Short Description
    voltage dependent anion channel 2
    Curator Summary
    Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol.
    Computational Description
    voltage dependent anion channel 2 (VDAC2); CONTAINS InterPro DOMAIN/s: Porin, eukaryotic type (InterPro:IPR001925); BEST Arabidopsis thaliana protein match is: voltage dependent anion channel 5 (TAIR:AT3G49920.1).
    Link
    InterPro Scan - TAIR