F10408

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10408

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10408

Determination of introduced cDNA(s)

  • RAFL09-66-M08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-M08 - Resource: pda08649

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-M08 - full reading 
    AAACATGCCT AACTCGATTC TCTTTCTTCT TCTTTCATTC CTGTATCTCA 
    CAAACTGCGT TGCTCAATCT CCATCACAAA CTTGTCCTTT AGATTTCTCT 
    CATGTCCTAA CAATCCCATG GAACACAACA GATTGTCAAA AGTCCGACAA 
    ATCAGCCGAT AGCAAGAACA GTTGTTGCCA ATCTCTTTTA ACTCTAATCG 
    GAATCCCTCT AGCTCATCGT CTCAAACAAA CTTCCAATTT CCGTCTCCCA 
    AATCTCGCTA CTTCAATCTC TTGTCTCAAC AATCTCCAAA CGAAGCTTAG 
    TTCACTCTCT CTATCTTCGA ATCTCACCTC TCTCTGTTTC GATCCGAATC 
    AGTTCGTCAT CAATAACGAA ACCTGTGCTG GAATCCAAAC GACTCAAGAT 
    TGGGTATCTC GTCTCGGTCC ATCTACGGCG CTTGACTCCG CCTGTAGCAG 
    TGGTCTCACT GATCTAACGC GATGCGACGC TTGCGTGGCG GCTGGGTTTA 
    GGGTTCAAAA ACAGCTCATC ACTTTGGACG GTAATAGCTC TCACGGTGTT 
    TATTGTTACC ATTTTGTGGT TACTTACGCT GCTGGTATTG TTAACAAGAA 
    AGGACCTGAG AGTGATGATG CTTTGTCTTG TCTCTTCTCT TTGAGTTTGA 
    GATCTCCATT GAACTCAAAG AAGAAAAGAC ACACGGTGGC TCTTGCTTTA 
    GGGATAACCG GAGCTATTTT CGGGGCTCTG GTTATTGCCG GTTTGATTTG 
    TTTGTATTTC CGGTTTGGTA AAGCTGTTAA AGGAGGAGAG GTTGGTTGGG 
    AGGATCAAGG GTCTAGACCG AAATGGAGAC CAAACACTGG CTCTATCTGG 
    TTCAAAATCG AGGAACTAGA GAAAGCTACG AATAACTTCT CGCAGAAGAA 
    TTTCATCGGT CGAGGCGGGT TTGGTTTTGT TTACAAAGGG GTTTTACCAG 
    ATGGATCGGT TATCGCGGTT AAGAAGGTGA TAGAGTCTGA GTTTCAAGGG 
    GATGCAGAGT TTCGTAATGA GGTTGAGATC ATTAGCAATT TGAAACATAG 
    GAATCTTGTT CCGCTTAGAG GTTGTAGTAT GGTGGATGAT GATAGTGAGA 
    GTCAGAGATA TCTTGTTTAT GATTACATGT CTAATGGAAA TCTCGATGAT 
    CACTTGTTTC CTCGAGGTGA GACTACGAAG ATGCCATTGA GCTGGCCTCA 
    GAGAAAGAGC ATCATTTTGG ATGTGGCTAA AGGGTTGGCT TATTTGCATT 
    ACGGTGTGAA ACCCGCTATT TATCACCGGG ATATTAAAGG TACGAACATA 
    TTGTTAGATG TCGATATGAG AGCGAGAGTT GCGGATTTCG GTTTAGCTAA 
    ACAGAGTAGA GAAGGAGAGT CTCATCTCAC TACCAGAGTT GCGGGAACAC 
    ACGGTTACTT GGCTCCAGAG TATGCCCTCT ATGGTCAATT AACCGAGAAA 
    AGCGATGTGT ATAGCTTCGG GGTTGTTATA TTGGAGATCA TGTGTGGAAG 
    GAAAGCTCTT GATCTGTCTA CTTCTGGATC ACCAAACACT TTTCTGATCA 
    CAGATTGGGC TTGGTCATTG GTAAAAGCAG GGAAAACAGA GGAAGCTCTT 
    GAGCAGTCTT TGTTGAGAGA GGAAGGCTCA GGGCTCTCGA ATCCGAAAGG 
    GATAATGGAG AGATTCTTGC AAGTTGGGAT ATTGTGTGCC CATGTATTGG 
    TTGTTTTAAG GCCAACAATA TTAGATGCAT TGAAAATGCT TGAAGGAGAC 
    ATCGAGGTTC CTCCTATTCC GGACCGACCA GTCCCGCTCG CGCATCCTTC 
    GTACCGTATG GACGGAAACG GATTCACAAT ATCGCCTGCG CTTAGCGGAC 
    TACAAATACA TTCCGGAGAT ATGCTCAGAT GAAAAAACTA GGCTCATGTG 
    AGATTTTATT TTGTAAATAT TTGAAAGCAA CGATCACGTC TTTTGATTAC 
    ATCATGTAAA ACAATTTCAG AATGTTGTAG TATATCATAA GTAGGGAAAA 
    CATATAGTTC ATTGTAGGAT TATATTCTAA ATCAAAGTAG AGGCGAAGGC 
    TGAGATGCGG GGGTGAGGGC GGTAGCTGGT GGAAGCCTTC CGGTACAAGT 
    GCAAAAGTTA TTAAGGCACT CACATTTGGT GCAGTGGTTC ACAGTCCTGC 
    ACCATCTTGA CACTAATGGT CCTCTCGCCT CAGCCACCAT GTAAAATTCT 
    GCAACCATTC AAATTTGTGT TTATTTTTGT CCGTTGCAAA ATTTATATGT 
    ATATAAATAA GAAGAAATTA CATATTTTTT TT

    Gene models with high sequence identity

    1. AT1G11050.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 99.96

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Serine/threonine-protein kinase domain 2.6e-30
    HMMSmart Tyrosine-protein kinase, catalytic domain 8.8e-15
    HMMPfam Serine/threonine-protein kinase-like domain 3.6e-43
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    superfamily Protein kinase-like domain 6.6e-77
    HMMPanther SER/THR RECEPTOR-LIKE PROTEIN KINASE 2e-283
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2e-283
    ProfileScan Protein kinase, catalytic domain 35.651
    Gene3D no description 1.2e-19
    Gene3D no description 1.7e-46

    See the detailed result >

    AT1G11050.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: receptor-like kinase in in flowers 3 (TAIR:AT2G48010.1); Has 115297 Blast hits to 114175 proteins in 4324 species: Archae - 104; Bacteria - 13350; Metazoa - 42303; Fungi - 9816; Plants - 32853; Viruses - 335; Other Eukaryotes - 16536 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR