F10508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10508

Determination of introduced cDNA(s)

  • RAFL04-13-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-D07 - Resource: pda00330

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-D07 - full reading 
    AAAGAGTTTT AGGTTTTTTT TTCTTCTTCT CGGAGGTTTG TAGAATCAAC 
    AAAAATGGTG GAAGACCACA AGCACGAGGA ATCGATCTTG GAGAAGATTG 
    TTGAGAAGAT CCATGGCCAC GGTGACTCGT CTTCTCTGTC CGATTCCGAC 
    GACGATAAGA AATCTACATC GTCTTCGTCG TCGTCCTTCA AGTCAAAGAT 
    TTACCGACTT TTCGGAAGGG AGAAACCTGT TCACAAGGTT CTCGGTGGTG 
    GAAAACCTGC TGATATATTC CTTTGGAGGA ACAAGAAGGT ATCTGGTGGA 
    GTCTTGGGTG CTGTAACTGC GTCTTGGGTC TTATTCGAGT TATTCGAATA 
    CCATCTCCTC GCTTTTCTCT GTCACTTTGC GATTTTTGCT CTTGCAGCAT 
    TGTTCTTGTG GTCTAATGCT TGTACATTCA TCCACAAGTC AACTCCTCAC 
    ATCCCGGAAG TTCACATCCC TGAAGATCCT ATTCTTCAAC TTGTTTCTGG 
    ATTAAGGATT GAAATCAATC GTGGTTTGAC CCTTCTTAGG AACATTGCAT 
    CAGGAAAAGA TGTCAAGAAA TTTATCCTGG TAATTGCTGG CTTGTGGGTT 
    TTGTCCATTA TTGGCAGCTG CTACAACTTC TTGACATTGT TCTACACTGC 
    TACTGTCCTT CTCTTCACCA TTCCTGTACT CTACGAGAAG TATGAGGACA 
    AAGTAGATGC CTATGGGGAG AAGGCGATGA GGGAGATCAA AAAGCAATAT 
    GCAGTACTTG ATGAGAAGGT ATTGCGTAAG GTCATAAGCA AGATTCCAAG 
    AGGAGCTCTG AACAAGAAGA AGGATTAAGG AATGTGAGTT ACTCTCTCAT 
    TGGAATCGTA GTAATGGTTC AAGACATGTT TTGTTAGAAG CTGTTGGTTG 
    ATAAACCCTT TGATCTCTTG TTATTATTAT GTTCATTATA AATTTGGGGG 
    TTTTAACTAA AAATATTTAG ATTATGAGAG AACACGGATG CATGATAATT 
    ATTGTTGTTA GTTATTTGTC TTAGTTAATT TCTCATCCTT TTAACAAAAA 
    AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT5G41600.1 [+] show detail - VIRB2-interacting protein 3
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Reticulon 6.5e-56
    ProfileScan Reticulon 43.011
    HMMPanther RETICULON-RELATED (PLANT) 6.5e-104
    HMMPanther Reticulon 6.5e-104

    See the detailed result >

    AT5G41600.1

    Model type
    Protein coding
    Short Description
    VIRB2-interacting protein 3
    Computational Description
    VIRB2-interacting protein 3 (BTI3); INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane, endoplasmic reticulum membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulan like protein B3 (TAIR:AT1G64090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR