F10513

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10513

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F10513

Determination of introduced cDNA(s)

  • RAFL07-11-I06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-11-I06 - Resource: pda01450

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-11-I06 - full reading 
    ATAATTTACT AAATATCACT TTCTAGTCTC TTCTCTTTAC TTTGGTCGTC 
    CACAATGAAA GGAGGCAGCC TCTCGTTTCT CTTCGTTCTC CTAATCGCCA 
    CCATCACTTC CGTCATTTGC TTCAGTGACG GGATGTTACC AAACGGCGAC 
    TTTGAACTAG GACCAAAACC ATCGGACATG AAAGGAACGC AAGTAATAAA 
    CAAGAAGGCG ATTCCTAGCT GGGAGCTTTC AGGCTTCGTC GAATACATAA 
    AGTCCGGTCA AAAACAAGGA GACATGCTTC TCGTAGTCCC GGCCGGAAAG 
    TTCGCAATCC GGCTAGGCAA CGAGGCATCG ATCAAACAAA GACTTAACGT 
    TACAAAAGGA ATGTATTACT CACTGACGTT CAGTGCCGCA AGGACATGTG 
    CCCAAGACGA ACGGCTCAAC ATATCGGTGG CACCTGACTC AGGCGTTATT 
    CCTATACAGA CGGTGTACAG TAGCAGTGGA TGGGACCTTT ACGCATGGGC 
    GTTCCAAGCC GAGAGTAACG TGGCAGAGAT CGTGATTCAT AATCCTGGTG 
    AGGAGGAAGA TCCTGCTTGT GGACCACTCA TTGATGGTGT GGCAATCAAA 
    GCTCTATACC CTCCTCGGCC CACCAATAAG AATATATTGA AGAACGGAGG 
    ATTTGAAGAA GGTCCCTACG TACTCCCAAA CGCAACAACC GGCGTTCTGG 
    TTCCTCCCTT TATAGAAGAT GACCACTCTC CTTTACCCGC GTGGATGGTC 
    GAATCACTCA AAGCCATCAA ATACGTTGAT GTCGAGCATT TCTCGGTCCC 
    ACAAGGCCGT CGAGCCGTGG AGCTAGTGGC AGGCAAAGAA AGCGCAATCG 
    CTCAGGTAGC TAGGACCGTT GTGGGAAAAA CTTACGTGCT TTCGTTTGCG 
    GTTGGAGATG CTAACAATGC TTGCCAAGGA TCGATGGTGG TCGAGGCATT 
    TGCGGGAAAA GACACTCTAA AGGTACCTTA TGAGTCTCGA GGCAAAGGAG 
    GGTTCAAACG CGCTTCTCTA CGGTTTGTGG CGGTTTCGAC CCGCACAAGA 
    GTTATGTTTT ACAGCACATT TTACTCGATG AGAAGCGATG ATTTCTCATC 
    ACTGTGTGGG CCCGTGATCG ATGATGTTAA GCTCCTCAGT GCTCGTAAGC 
    CGTAAGATGG CCATTGTTTT ATTTCTAAGG TTCTTCGTAT AAGCCAGTGT 
    GGTTTTTTAT ATAAATATGA TTTTCTTAAT CTCTAATGCT TTTGAAATGA 
    GATGAGTAAT ACTGAAAGGG TGTTTGTGGT GTAGGGTTTT ATATAAGGCA 
    AAAAGGTCTT GCTTATATAT ATTTTCTTGT ATGAGAAGGC TAAAGAAATG 
    TTGTCTGTTT TTACTAAATT GGGTTCTTTC AAGGAGATCG GGTGATTGTG 
    AGAATAAAAA TGTAATACAG ATATATATGG TAGAGAGGAA TGAGGATAAT 
    AATTTAACTG AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT5G11420.1 [+] show detail - Protein of unknown function, DUF642
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF642 2e-165
    superfamily Galactose-binding domain-like 3.4e-06

    See the detailed result >

    AT5G11420.1

    Model type
    Protein coding
    Short Description
    Protein of unknown function, DUF642
    Computational Description
    FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR