F10711

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F10711

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F10711

Determination of introduced cDNA(s)

  • RAFL09-70-F18 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-F18 - Resource: pda06707

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-70-F18 - full reading 
    AAGTGTCTCA TTCTACAAAT ATATATAACA ACAGCCTTCA ATCTTCCATA 
    TCTATCTCTC TCCCTCTGCT CGGCGAGAAT AATCACTTAA TCAGACATCA 
    GAAGCAGCAT GATGAAGTTC AAGTTCCAGT ACGAGGAGGA ATACATCAAA 
    AACTCGAGAG ACGTTGAGTT GTTCGCTTGC AGATGGCTTC CTTCTTCTTC 
    TCCCCGAGCT CTAGTCTTCC TCTGCCATGG TTATGGAATG GAGTGCAGTA 
    GCTTCATGAG AGAATGCGGA ATACGGCTGG CATCAGCGGG ATATGCAGTG 
    TTTGGGATGG ACTACGAGGG GCATGGTCGG TCCAAGGGTG CTCGTTGCTA 
    TATAAAAAAA TTCAGTAATA TAGTAAATGA CTGCTTTGAC TATTACACAT 
    CCATCTCTGC ACAAGAAGAA TACAAAGAGA AAGGTAGATT TTTGTATGGA 
    GAATCAATGG GAGGTGCAGT TGCTTTGTTG CTTCACAAGA AAGATCCTTC 
    TTTTTGGAAC GGGGCTCTTC TCGTTGCTCC CATGTGTAAG GTCACGTTTC 
    TTCTCATCTC TATCATCGAA ACCCTATATT TAATCAAGTT AAGACACAAA 
    ATCTATTAGT TTTAGACACA ACTTAATTAT CAACATTTTC ATTAGTTTTG 
    TGTGTGTGGG CAGATATCAG AGAAGGTGAA ACCACACCCA GTAGTCATAA 
    ATCTACTAAC GAGAGTTGAA GATATTATAC CAAAATGGAA GATAGTTCCT 
    ACAAAAGATG TTATCGATGC TGCCTTCAAG GATCCGGTCA AGCGCGAAGA 
    GATAAGGAAC AACAAGCTGA TATATCAAGA CAAGCCAAGA CTTAAAACCG 
    CACTTGAAAT GCTTAGAACG AGCATGGACC TTGAAGACAC TCTCCACGAG 
    ATCACATTGC CTTTCTTTGT CCTTCACGGT GAAGCAGACA TTGTGACTGA 
    TCCAGAGATA AGCAAAGCCT TGTTCGAGAA GGCAAGCACA CGCGACAAAA 
    CCATTAAACT TTACCCAGGA ATGTGGCATG GATTAACTTC TGGTGAGCCT 
    GATGCTAACG TTGACCTCGT TTTTGCTGAC ATTGTCAATT GGCTTGATGC 
    TCGTACCGGC GACTCCGCTT CTCTGACAGT CACTCCCGTA CATGATTTTA 
    CCTCCAATGT TCAAAAGGTC GTTGACGGTG TTAGTAACGG TCAAGGAAAA 
    TCTAAACGAC CACAAGCTAG TCTCCTTTGT GGTTTAAATG GTGGTGGACG 
    TCGTTTGGTC CATAGATCTT CTATGTAATG ATAAACTAAA CAGAGAAGAA 
    TCTGTTTTAT TTTGTACTTC AGATTCGTTT TCCTAAATC

    Gene models with high sequence identity

    1. AT3G62860.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 6e-11
    Gene3D no description 2e-06
    superfamily alpha/beta-Hydrolases 7.2e-22
    superfamily alpha/beta-Hydrolases 2.2e-15
    HMMPanther LYSOPHOSPHOLIPASE 4.5e-73
    HMMPanther PHOSPHOLIPASE-RELATED 4.5e-73
    HMMPanther LYSOPHOSPHOLIPASE 3.8e-122
    HMMPanther PHOSPHOLIPASE-RELATED 3.8e-122
    HMMPfam Hydrolase_4 2.1e-21

    See the detailed result >

    AT3G62860.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G47630.1); Has 2895 Blast hits to 2893 proteins in 1018 species: Archae - 30; Bacteria - 1827; Metazoa - 110; Fungi - 120; Plants - 454; Viruses - 49; Other Eukaryotes - 305 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR