F11119

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11119

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11119

Determination of introduced cDNA(s)

  • RAFL08-16-E19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-E19 - Resource: pda07929

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-E19 - full reading 
    GGCAACGACT TTCATTACAC AAAATTGCGG AAACTATACA AAATTAGCCA 
    TGGATAAAAA TGGAAAATAA CAAACCGAAA CTTGGCTGTA ACAAAATCTG 
    TTAGGGATGT TTCATAAAAA TATACACCAA ACTAATAAAA TTCGAAACCA 
    ACCAAATGAT AAAATTTTGC CTATGACCAA AAAAACATAA ATGACACAAT 
    GTGAAAAGAA AAACATATTT GTTGATTGGA GGAACCTTCC TGTTGCCTCG 
    TGGAACTTGA AGTTTGACAC AATTGCTGAC ACCACTGTAC TACCTATCTC 
    TTCTTTATGA ATCTTCAAAT GTCTTTTTTT ACGCTATAAA CTCACTTTCT 
    TCTCCTCCAA GAGCCAAATA AACACACAAA AAAAAACTCA AAATCATGAG 
    AAGCTCCGAT CATATGGCGT TTGCCGGCGT TTTGCCGATT GTTTTCTTGC 
    TTATATTATC ATCAGCGGAT CTAGCAGCGA GTCAATCACA GCCCGGTCCA 
    ACAAATCAAC CGTATAACTA CGGCAGACTA AGTCCAGCCA TGGCAGTGAT 
    CGTCGTGATC CTAATCGCTG CTCTCTTCTT CATGGGCTTC TTCTCTATCT 
    ACTTCCGTCA CTGCTCAGGC GTACCAGACG CCGGTGTTTC TCCAGCTGGT 
    GGAGCTAGAT CCAGAGCAAC CGTCAACGCG GCGGCGCGTG GTCTCGACGT 
    TTCAGTTGTC GAGACTTTTC CTACGTTCTT GTACTCAGAT GTGAAAACGC 
    AGAAGCTTGG TAAAGGAGAG TTAGAGTGTG CGATATGTTT GAACGAGTTC 
    GAAGACGACG AAACGCTGCG TTTGCTTCCC AAGTGTGATC ACGTGTTTCA 
    TCCGCACTGC ATCGATGCTT GGCTCGAGGC TCACGTGACT TGTCCCGTTT 
    GCAGAGCGAA TCTTGCTGAA CAGGTAGCTG AAGGTGAGTC AGTTGAACCG 
    GGAGGAACTG AACCGGATCT TGAATTGCAG CAGGTTGTGG TGAATCCTGA 
    ACCGGTGGTT ACTGCACCGG TACCGGAACA ATTGGTGACT AGTGAAGTCG 
    ATTCGAGGAG ATTACCTGGT GTACCGGTGG ATCTTAAAAG AGTTAAATTC 
    TCGAGATCGC ATACGACGGG ACATTCGGTG GTTCAACCGG GAGAATGTAC 
    CGAACGGTTT ACTCTTCGGT TACCGGAAGA TGTGAGGAAG AGGATAATGA 
    AGGATTGGAA ATTGAACCGG ACGAATAGTC TTCTGGTTCT TCCTAGAGGA 
    GGGAGTTCGA GGAGAGGTAA ACCGATTGAC CGGTCAAGGG CTCGGTCTGA 
    TCGATGGTTG TTTCGTAAAA CGCCTTCGTT TCTGTGGAGG AGTCGTGATG 
    ATGGTTCGAT TAGGTTAGGT GCTACCGGTA GCGTTCGAGC CAGTGCTGTA 
    CCGAATTCAA CCGGTAGTGA TTCGGTACGT GCAGGAGACC GGTGGGCTTT 
    TCTTAGAAAC GCGTCGTTTT TGTGGAGGAA CTCTTCGGTA CATGTGCCAA 
    GAGGAGGAGT CAATAAAGAC GGCGAAGGAA CTTCGGTTAA ATCGACCGGT 
    GCAAGTGGCT

    Gene models with high sequence identity

    1. AT3G05200.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Zinc finger, C3HC4 RING-type 4.7e-08
    Gene3D no description 4.6e-16
    ProfileScan Zinc finger, RING-type 12.873
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 6.3e-18
    superfamily RING/U-box 2.2e-18
    HMMSmart Zinc finger, RING-type 3.2e-06

    See the detailed result >

    AT3G05200.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Curator Summary
    Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6).
    Computational Description
    ATL6; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: carbon/nitrogen insensitive 1 (TAIR:AT5G27420.1); Has 9947 Blast hits to 9919 proteins in 286 species: Archae - 0; Bacteria - 0; Metazoa - 2610; Fungi - 790; Plants - 5036; Viruses - 50; Other Eukaryotes - 1461 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR