F11510

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11510

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F11510

Determination of introduced cDNA(s)

  • RAFL06-82-E06 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-82-E06 - Resource: pda03824

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-82-E06 - full reading 
    ACTTTTTCCA GAAATCTCTC ACTATCGCCA TCGATTTTAG CAGACATTGA 
    AGAAGATGGG AGTATTCACA TTCGTATGCA AGAATGGAGG CGGCGCGTGG 
    AGCGCGAAGC AACACGAAGG AGAACTTGAA TCTTCAGCTT CTTCTACCTA 
    CGAGCTCCAG CGTAAGCTCG TTCAGGTATC TCTCTCCGCT GATTCCTCCG 
    GTGGCGTTCA GTCTTCGTTT TCTCTTGTCT CCCCTACCTC CGCCGTATTC 
    CAGGTAATTG TTGGTGGTGG TGGTGGTGGA GGATTCTCTG CTGGAGGAGC 
    TGCCTCAAGT GGAGGTGGTG CGGGTGAAGC TGCAGCTGCC CCTAAGGAAG 
    ATGAGAAGAA GAAAGAAGAA TCAGAAGAGG AAGAAGGAGA CTTCGGATTC 
    GATCTCTTTG GTTAAGATTG AAATAGTATT TTGGAGGTGT TGGTTTGAGC 
    TTTCCATTTT TGTGTGGGGT GTTTCTTCCA TTGTCAAGTG TGATATGCTA 
    CACTGCTTTC AATTATATTT CGTGAGTAAT GACAAGTTTC TCTTTCGATC 
    CAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT4G25890.1 [+] show detail - 60S acidic ribosomal protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN P3 2.8e-76
    HMMPanther 60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER 2.8e-76
    HMMPfam Ribosomal protein 60S 4.5e-08

    See the detailed result >

    AT4G25890.1

    Model type
    Protein coding
    Short Description
    60S acidic ribosomal protein family
    Computational Description
    60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosolic ribosome, ribosome, nucleus, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G57290.3); Has 643 Blast hits to 642 proteins in 155 species: Archae - 0; Bacteria - 8; Metazoa - 276; Fungi - 74; Plants - 217; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR