F11635

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11635

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11635

Determination of introduced cDNA(s)

  • RAFL06-71-B03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-71-B03 - Resource: pda03353

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-71-B03 - full reading 
    ACTTAGGGTT CATAGCAGCC AGAGAGAGAG ACAAGTGAGA GGGATCTACC 
    AAACGAAGCA ACAATGGTGA AGTTCTTGAA GCAGAACAAG GCCGTGATCC 
    TTCTTCAAGG ACGTTACGCC GGAAAGAAAG CCGTCATCAT CAAATCCTTC 
    GACGACGGTA ACCGTGATCG TCCTTACGGA CACTGCCTCG TCGCCGGACT 
    CAAGAAGTAC CCGAGCAAAG TCATCCGCAA AGACTCAGCT AAGAAGACAG 
    CTAAGAAATC TAGGGTTAAG TGTTTCATCA AGCTTGTTAA TTACCAGCAT 
    CTGATGCCTA CTCGTTACAC ACTCGACGTG GATCTCAAGG AAGTGGCGAC 
    TCTTGATGCT CTTCAGAGTA AGGATAAGAA GGTTGCTGCT CTTAAGGAAG 
    CTAAGGCTAA GCTTGAGGAG AGGTTCAAAA CCGGTAAGAA CAGATGGTTC 
    TTTACCAAGC TCAGGTTCTG AAGAAATTTT CTATTTCGTG AGGAATTCAT 
    TTTGAGCGTT TTGTTATCGT GTTTTTTAGT TTCTAGGGTT CATTTCCCAT 
    GGTGAAAAAT GTGGATCCTG TTTTGGATTG TGGAAGATGT TTTGTTGAAG 
    TTTGGATTAT GGATTTGATC TTTCAAAAAA AAAAAAAAAA

    Gene models with high sequence identity

    1. AT4G15000.1 [+] show detail - Ribosomal L27e protein family
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Ribosomal protein L27e 2.1e-79
    PatternScan Ribosomal protein L27e, conserved site 0
    HMMPfam Ribosomal protein L27e 9e-33
    Coil coiled-coil 0
    BlastProDom Ribosomal protein L27e 5e-27

    See the detailed result >

    AT4G15000.1

    Model type
    Protein coding
    Short Description
    Ribosomal L27e protein family
    Computational Description
    Ribosomal L27e protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27e, conserved site (InterPro:IPR018262), Ribosomal protein L27e (InterPro:IPR001141); BEST Arabidopsis thaliana protein match is: Ribosomal L27e protein family (TAIR:AT3G22230.1); Has 764 Blast hits to 764 proteins in 292 species: Archae - 0; Bacteria - 0; Metazoa - 341; Fungi - 149; Plants - 139; Viruses - 0; Other Eukaryotes - 135 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR