F11744

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11744

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F11744

Determination of introduced cDNA(s)

  • RAFL04-13-J11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL04-13-J11 - Resource: pda07154

    full reading [+] show sequence

    Nucleotide sequence: RAFL04-13-J11 - full reading 
    ATCAATACAA ACTTAGTAGT GTATTCTTTA TACGTATAAT AACATCCCTT 
    GTGATCAAAC AAGTAAACCA TTCAAAAGAT GAAAGGAAGA ATTTTGATTT 
    TGAGTTTGCT CATAATGAGT CTGGTCATGG CACAAGTTCA AGTAGAAGCA 
    AAGATCTGCT GCCCTTCCAA CCAAGCTAGA AATGGCTATA GTGTATGCCG 
    TATAAGGTTT TCCAAGGGAA GGTGTATGCA AGTGAGTGGA TGCCAAAACT 
    CTGATACATG CCCTCGAGGT TGGGTAAACG CCATTCTCGA AAACTCAGCT 
    GATGCTACCA ATGAGCACTG CAAGTTAGGG TGTGAAACTT CTGTGTGTGG 
    TGCCATGAAC ACTCTCCAGA ACTCTGATGC AAGTGAAATT GTGAATGGAG 
    CGTCGGAACA ATGTGCCAAG GGATGTTCTA TTTTCTGTAC CAAGAGCTAT 
    GTAGTCCCAC CTGGGCCGCC TAAACTGTTG TAATGGTCGT ATATGTGAAA 
    AAACAAATGC TAGACTCTTG CTATTCTGGT TTGTGTGTGT GTGTGTGCAT 
    GTGTCGTAGA AGGTTTGTTC GATCACTAGA TTGTACATGC CCTCTACTTC 
    CTATAACCTA AATAAAGAGT TAAACGTACG TGTCTTTTAA AAAAAAAAAA 
    AAAAAAAAAA AAAAGAAAAA AAAAAAAAAA A

    Gene models with high sequence identity

    1. AT1G72260.1 [+] show detail - thionin 2.1
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Thionin 7.4e-06
    HMMPfam Thionin 2.8e-14
    superfamily Thionin 7.2e-12
    PatternScan Thionin 0

    See the detailed result >

    AT1G72260.1

    Model type
    Protein coding
    Short Description
    thionin 2.1
    Curator Summary
    Encodes a thionin which is a cysteine rich protein having antimicrobial properties. Thi2.1 is expressed in response to a variety of pathogens and induced by ethylene and jasmonic acid. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.
    Computational Description
    thionin 2.1 (THI2.1); FUNCTIONS IN: toxin receptor binding; INVOLVED IN: response to jasmonic acid stimulus, defense response, jasmonic acid mediated signaling pathway; LOCATED IN: endomembrane system; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Thionin (InterPro:IPR001010); BEST Arabidopsis thaliana protein match is: Plant thionin (TAIR:AT1G66100.1); Has 198 Blast hits to 198 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 198; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR