F11813

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F11813

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F11813

Determination of introduced cDNA(s)

  • RAFL09-07-A10 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-07-A10 - Resource: pdx08525

    5 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-07-A10 - 5 prime EST 
    GATCTTCTTT CTATAGTTTC CATGAAGTCT TCTTCTTCTC AGAGCTACGA 
    TGTTTTCCCC AACTTCAGAG GGGAAGATGT CCGCCACTCA TTAGTCAGCC 
    ACCTTCGTAA GGAACTTGAT CGCAAATTCA TCAATACATT CAACGACAAC 
    AGGATCGAAA GAAGCCGCAA AATAACCCCA GAGCTGTTAT TGGCTATAGA 
    AAACTCAAGG ATCTCACTTG TCGTCTTCTC TAAAAACTAT GCTTCTTNCA 
    CGTGGTGCTT AGATGAATTG GTGAAGATCC AAGAGTGCTA TGAGAAATTG 
    GATCAAATGG TGATTCCTAT TTTCTACAAA GTAGATCCTT CTCATGTTAG 
    AAAACAGACC GGAGAGTTTG GCATGGNCTT TGGGGAGACC TGCAAGGGCA 
    GAACAGAGAA TG

    Gene models with high sequence identity

    1. AT4G16990.5 [+] show detail - disease resistance protein (TIR-NBS class), putative
      E-value: 0; Score: 99.51

    3 prime EST [+] show sequence

    Nucleotide sequence: RAFL09-07-A10 - 3 prime EST 
    ACTAAAAATG ATCCAATGTT TAATTAGTGT ATTAAAGCCA TGAAGTACAA 
    ATTAAAGACT TGCACTGAAT GCAATTATTA AACAGATTTC GACAATTTCG 
    CGCTAACCCG ACCAGACTTA GCCAAACAGA TCTGCTTGGC TTAAGTATCT 
    AGCTCAAGTC CTGACTTTTA CAAGGGCCAG GCCGTGCTTC AGTTTGGTCT 
    TAATTGACGA ATGACACGTC TATCATCAAA CCTACCATCA AATGATTTAT 
    CTATGCCACA TATGTTGTGC TCCTGGTACA CTTTTATCCA ATTTTCCGAC 
    CACCAAACTT TTGCTTGTTG CGCCATTCTT CGGCTGAACT CCAAATGTTT 
    GAGAACTATA ATTCCGCCAC TGAGGATGCC AAGTGTTATA TACACACCTT 
    GTTCACAGTA CTCGAAATTT TTCTCGTCCA CTTGA

    Gene models with high sequence identity

    1. AT4G16990.5 [+] show detail - disease resistance protein (TIR-NBS class), putative
      E-value: 0; Score: 100.00

    AT4G16990.5

    Model type
    Protein coding
    Short Description
    disease resistance protein (TIR-NBS class), putative
    Computational Description
    RESISTANCE TO LEPTOSPHAERIA MACULANS 3 (RLM3); FUNCTIONS IN: ATP binding; INVOLVED IN: defense response to fungus, incompatible interaction, regulation of defense response by callose deposition, defense response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591), Disease resistance protein (InterPro:IPR000767); BEST Arabidopsis thaliana protein match is: Disease resistance protein (TIR-NBS-LRR class) family (TAIR:AT4G16940.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR