F12025

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12025

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12025

Determination of introduced cDNA(s)

  • RAFL09-41-E03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-41-E03 - Resource: pda06249

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-41-E03 - full reading 
    AAAAAAAAAA AAGAACAGAA GAAAACGGAA GTTTTTGTTT CTGGAGAGAA 
    AACCAAAAAG TTCATTTTGT TTTTCTCTAT TTCGTCTTTC CTGCGATTCT 
    GAATATCACT CTTCTTCAAT CTCTTTGTCA GAATCGTAGC ATTGGCTTGT 
    GAGCTTTGAT CCTTCTTTCT TTTTTTCTTC CCGTTTGTGA AAAAAGAGAG 
    ACTAGTATTT ATCATCGTTG TCACCGCCGA TCTGTCGTCG GCAGATGGCA 
    AAACCATTAC TTTTACCTCC AATTAATAAC CCGGATTCGT TGGATTGTTG 
    GACGTCTCTG TTTCTTCTAT CTAGTGTTTC AACTCCGGCA TAGAAAGGAT 
    CTGATTTGGT TAATCTCAGA GCCCTTTTTG TAGACACATT GTAAAATTTG 
    AATTGGTGAG GAGGAGTTAG AGCCGTCCGA TTGGGGTTTG ACCCGATTGA 
    AGCGGAGAGG ATGGCAAAAA GTTGGTTTTT GGTTGAGAAG GCGAGAAGAT 
    GTTTGAGGAC GGTGTTCTTC ATGGTTGCTA TGTTGGCTTC GCTGCTAGTT 
    TCCTCGTTGC CATTGTTAGT AGCTATAGGT GATGTGTTGG TTCCCAGCTT 
    CTTGTTGTCG AGCTTTACTT GTGTGACGTG TTACGGCGCC AAGGAGCATC 
    TGAGGCGATA CGGTTTCAAG AGATCTTTGA CTGATATTCC TATCGTCTCT 
    GTTGTCAGAT CTTTCCTTGT CATCTGTATC TATTTACTCT CGGACGTTCC 
    TGCTCTCTCG CACGGTCCTT ACCTTGGAAC TGTATCTCTG TGTTCTGTGG 
    TTTCGGTTCT TCTTCTTTCA GTTAAAGCTT GCCTTTTCAC TGTTAATTCT 
    CAACTCAACA ACGAAGCCTC GTTCTCTCCA TCTAGGAAAC GGCTCCACCT 
    GAAGAAGTCG TGGGGGATGC CGGTTTTGTT CCTCTCATCT GTGGTTTTTG 
    CCCTTGGTCA TACGGTTGTA GCATACAGGA CAAGTTGCAG AGCGAGGAGG 
    AAAATTTTGT ATCACCGAGT TGACCCTGAA GCTGTTCTTT CATGCAAAAG 
    CATCTTCTCT GGCCACCAGA AAGTCCCGCG GTCACCCACT CCTGTGGTTG 
    GAAAGGCCTC CAAGTTTGAT GGAGAAGCAA GGCGAAAGCC TTTGTCCCAC 
    GATGAAGGAG AGCTTCCAGT GAGATTGCTT GCTGATGTTG ACAGTTTATT 
    CGTTACAATC CGAGGCCTCA CTGTGCATTA CAAGCTTTGT TCACCTGGTT 
    CACCTCGGCA GTCTATCTCC TCAAATGTTC TCGAAGCCAA TTCTAGTTAC 
    AATACGCCAG AGATAATGGC AGGAAGGTCG AAGTTTGACA GAAAAGTGTT 
    GAGTATGGTC ACCAAAAGCC AGCATCATCA TCACCACAGG AGCTACAACA 
    GTTTGTTTAA CAATTCTTCC TTGCACGACC CTCTTCTGGA TGGTTCTCCT 
    ACTTCTCCTC TTCTTTTCAA AGAGATTAAG GAAGGAACGG GACTAGTGGA 
    TGACATGAAT GTATTCAATT TTGGAGCTGA GGAGCAAGAC TTGGGTGAAA 
    GTGGTCAGTT TGGTGTGGTC CTGGTTCATG GATTTGGAGG AGGAGTGTTT 
    TCTTGGAGGC ATGTGATGGG TTCACTGGCT CAGCAGCTTG GTTGTGTTGT 
    CACTGCATTT GATAGGCCTG GTTGGGGATT AACGGCCAGG CCACATAAGA 
    ATGATTTGGA AGAAAGACAG CTGCTCAATC CTTATTCACT CGAAAATCAG 
    GTAGAGATGC TTATTGCTTT CTGTTATGAG ATGGGGTTCT CTTCAGTAGT 
    ATTTGTTGGT CATGATGACG GAGGTCTACT TGCTCTCAAA GCTGCACAAA 
    GATTGATGGC AACAAACGAT CCCATCAAAG TCGTGGTCAA AGGAGTTGTC 
    TTGCTTAATA CTAGCTTATC AAGGGAAGTA GTTCCAGCTT TTGCAAGAAT 
    ACTTCTGCAC ACATCACTAG GGAAGAAGCA CCTCGTTCGC CCTCTTTTAC 
    GCACTGAGAT AGCTCAGGTG GTGAATCGCC GTGCTTGGTA TGATCCTGCC 
    AAGATGACTA CAGACGTCCT ACGGCTATAC AAGGCCCCAT TACACGTAGA 
    AGGCTGGGAT GAGGCACTTC ATGAGATAGG TAGACTTTCA TCTGAGATGG 
    TGCTTGCACC TCAAAATGCA GCTTCGCTTC TGAAGGCTGT TGAAAACCTG 
    CCAGTGCTAG TCATTGCTGG GGCCGAAGAC GCCCTTGTGC CATTGAAGTC 
    CTCCCAAGGA ATGGCTTCTA AACTCCTTAA CTCTAGACTA GTAGCAATCT 
    CAGGATGTGG GCATTTACCA CATGAGGAGT GTCCCAAGGC GCTTCTTGCA 
    GCCATGTCCC CGTTCATCAC TAGACTTGTA ATTAGGCCAG ATCTCCAGAG 
    TCAATAGCCA GATCACTTGT TTTTCTTGTC GTCTTCTTAG CTTACAATCG 
    ATTAGTGTCG CCCAAAAATT TGAGGCCCTG CTAGGTAAAT TCATCTAATG 
    AGTGTTGTAA CCTTTCCCTT CTCTTGTGTT TTGTATGATT CGAGGGTGAT 
    TTTATTTATT AAACACTTGA AGATGAGTGT GGCACAGAAT CGTGCAAGTC 
    TCTGTAAATT TATCCGGTTT GGAATACGAA GTAAATTGCT TTCGTTTGCC 
    CAAAAAAAAA AAAAAAAA

    Gene models with high sequence identity

    1. AT1G15490.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 1.1e-45
    HMMPfam Alpha/beta hydrolase fold-1 4.4e-10
    HMMPanther ALPHA/BETA HYDROLASE 2.1e-82
    HMMPanther ALPHA/BETA HYDROLASE RELATED 2.1e-82
    Gene3D no description 1.6e-41

    See the detailed result >

    AT1G15490.1

    Model type
    Protein coding
    Short Description
    alpha/beta-Hydrolases superfamily protein
    Computational Description
    alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT1G80280.1); Has 5830 Blast hits to 5818 proteins in 1057 species: Archae - 56; Bacteria - 4179; Metazoa - 223; Fungi - 71; Plants - 420; Viruses - 1; Other Eukaryotes - 880 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR