F12141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12141

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12141

Determination of introduced cDNA(s)

  • RAFL09-49-C23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-49-C23 - Resource: pda09839

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-49-C23 - full reading 
    AAATAGTTTG ATTTCTGTTG TTGAGTTTAT GCGATATCCC AACTGGTGAA 
    ACTGTGTTTA TTGGTTCAGA CAGAGATAAA TGGCTTCAAA GATTATTGCT 
    GGCAAGCCGG ATGATACCGA GTATGAAATC ATTGAAGGTG AGTCTGAGAG 
    CGCTTTAGCA GCGGGGACAA GCCCTTGGAT GAATTCATCA ACGTTGAAGC 
    TTCGACATCG AATTGGAAGA GGTCCCTTCG GTGATGTTTG GCTGGCTACT 
    CATCATCAGT CAACTGAGGA CTATGATGAG CATCATGAAG TGGCCATCAA 
    AATGCTTTAT CCCATCAAGG AAGATCAAAG AAGGGTTGTG GTAGATAAGT 
    TTGAAGATCT CTTCTCTAAA TGTCAAGGAC TAGAGAATGT CTGTCTGCTC 
    AGGGGAGTCT CTAGTATCAA TGGAAAGATA TGTGTCGTCA TGAAATTCTA 
    CGAGGGCTCT CTTGGTGACA AGATGGCTCG GCTTAAAGGA GGAAAGCTTT 
    CACTGCCAGA TGTTTTGAGA TACGGGGTTG ATCTGGCTAC AGGGATCCTG 
    GAGTTGCACT CAAAAGGGTT TCTCATTCTC AATCTCAAGC CCTCTAACTT 
    TCTTCTCAGT GATAACGACA AGGCCATCCT CGGGGATGTT GGGATCCCTT 
    ATCTCCTTCT TAGTATCCCT TTACCAAGTT CTGATATGAC AGAGAGACTT 
    GGAACTCCAA ACTATATGGC ACCAGAACAG TGGCAACCGG ATGTCAGAGG 
    TCCCATGTCC TTTGAGACTG ATTCTTGGGG ATTTGGTTGC AGCATTGTTG 
    AAATGCTGAC TGGTGTACAA CCTTGGTCTG GGAGATCTGC CGATGAAATA 
    TATGATTTGG TGGTGAGAAA GCAAGAAAAG CTTAGTATCC CCAGTAGCAT 
    ACCGCCTCCT CTCGAGAACC TACTTCGGGG TTGCTTTATG TATGATCTTC 
    GAAGCCGACC TTCGATGACT GACATCTTAC TCGTCTTAAA GAGCTTGCAG 
    AACTCGGAGG AGGAACAGGT CAGGAGAGGC ATTGATAGTA GAGAAATCAG 
    GAAGAGCTCG GCTACTCTTG GTTATACAGA ATGGTTTCTT TCAAAGGATC 
    ATCTGCAAGT GCGCGACACC GTGCGTTCAA GAAAGCCTGC CAATTCGTGT 
    AAGCATGAGA ACATGGATGT GCCAGAAGGA ATGGTGGTTG GTTTAGAACG 
    TGACTCCACA GACCCAGATG GATTTGTGCT AGTTAAAGTC CATGGTGTAC 
    ATGATCCATT AAGGGTTCAC GTATCTGTTC TTGAACGGGT AACTAACGGC 
    TTAGCTTCTG GAGATTGGGT GCGTCTGAAG GTCAGGAAAG ACAAGAGGCA 
    CTCTCCGGTT GGTGTTCTCC ATTCAATTGA CCGTGAGGGA AATGTAGCTG 
    TTGGATTTAT TGGGTTGCCA ACTCTCTGGA AAGGGACATC ATCGCAGCTT 
    CAGATGGCTA AAGTATACAG TGTGGGTCAA TTTGTGAAAC TCAAAGCCAA 
    TGTTGTCATC CCGAGATTCA AATGGATGCG TAAAGGTAGA GGTATTTGGG 
    CAACTGGCAG GATCTCTCAG GTTCTACCAA ACGGTTGCCT TGAAGTGGAC 
    TTCCCTGGAA TGTTACCTTT TGGAGAGGAA CATGGAAGCT ATCTTGCAGA 
    TCCGGCTGAA GTAGAGATTG TGAATTTCAA TACATGTCAA GGAGCTGTGG 
    AAAAATATCA ACATCTGGAG GATTTTCATT GGGCTGTGAG ACCTTTGCTT 
    ATTGCTATGG GTCTATTGAC AGCGATGAAG TTAGGGATCT GTGTCAGGAA 
    GAAAATAGGA AGGTCAAAGG ATGGGAAACA ACGCGATGGC TCGACTGGAC 
    AAGGTGACTG TAAGATTCCG GATGGTAAGG GCTCTGACAA ATCTAAATGG 
    CTTGTGTTCT TTTAGGTCTG CTATGAGACA CAGACCTTGT CTGGTCCATA 
    TATTATACTG TTCTAGTCAT AATAACGTTT CATGTACATA ATGACGTTTT 
    TCTTTTTTGC TCTTTAAAAT TACCAAAAAG CTTTCACGC

    Gene models with high sequence identity

    1. AT4G32250.1 [+] show detail - Protein kinase superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PTHR22967:SF2 0
    Gene3D G3DSA:3.30.200.20 2.19999900980707e-07
    Gene3D G3DSA:1.10.510.10 1.2000011745814e-31
    superfamily Protein kinase-like domain 4.7e-53
    HMMPanther PTHR22967 0
    HMMPfam Serine-threonine/tyrosine-protein kinase 1.99999999999999e-30
    ProfileScan Protein kinase, catalytic domain 0

    See the detailed result >

    AT4G32250.1

    Model type
    Protein coding
    Short Description
    Protein kinase superfamily protein
    Computational Description
    Protein kinase superfamily protein; FUNCTIONS IN: protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: protein kinases;ubiquitin-protein ligases (TAIR:AT5G13530.2); Has 69788 Blast hits to 69453 proteins in 3396 species: Archae - 89; Bacteria - 9621; Metazoa - 27939; Fungi - 6217; Plants - 15112; Viruses - 181; Other Eukaryotes - 10629 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR