F12240

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12240

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • present in fewer numbers in organism (PATO:0001997)
    (Rosette leaf::Number::few)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • present in fewer numbers in organism (PATO:0001997)
    (Stem::Number::few)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12240

Determination of introduced cDNA(s)

  • RAFL06-67-H11 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-67-H11 - Resource: pda03270

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-67-H11 - full reading 
    AAAGAAATAA AGTAATGAAG AAAACTAGAA ATGTTGCTTC TTCTCCTATT 
    GAATGTGTCC ACCTCCAGAC CAAACCCACC ACCACTCTTG TTCGGTCTTT 
    CTTCTTCTTC CTCTTCAACT CTCAAACAAT CTCTTCCTTT ATCATCTTCT 
    ATCTCTTCCT CTGTTCCTTC TTCTGGTTTT GCCAATCACC AAACCTGACT 
    AACCCTTCTC CTCCTCCTCT CTCCGTCGCT CCCCTTCGCG GGGATGCCAA 
    TTCTCCACCG CCGGAATCTT CTTCTTCTCC GGCGACGAAA TCTTCTTTAA 
    TGATTTCTTC TAGAGATCCC AATGCCCTCT TTAGCGGCGG TGGAATCAGC 
    TTTTTAGCAG GAGTTAGAAC TGTGAAGTTT AGTTATGGTT ATTCTAGTCT 
    TAAAGGTAAA AGAGCAACAA TGGAGGATTA CTTCGAAACT AGAATCTCTG 
    ATGTTAATGG ACAAATGGTT GCTTTCTTTG GTGTCTTTGA TGGTCATGGT 
    GGAGCAAGAA CTGCAGAATA TCTTAAAAAC AATCTTTTCA AGAATTTAGT 
    TAGTCATGAT GATTTTATCT CAGACACTAA GAAAGCTATT GTTGAAGTTT 
    TTAAGCAGAC AGATGAAGAG TATCTTATTG AAGAGGCAGG ACAACCGAAG 
    AATGCTGGCT CGACTGCTGC GACTGCTTTT CTTATAGGTG ATAAGTTGAT 
    TGTTGCTAAC GTTGGTGATT CTAGAGTTGT AGCGTCAAGA AATGGTTCAG 
    CTGTTCCACT CTCTGATGAT CATAAACCTG ATAGATCAGA TGAGCGACAA 
    CGGATTGAAG ATGCTGGTGG CTTTATTATT TGGGCTGGAA CATGGCGAGT 
    TGGTGGAATT CTTGCGGTCT CTCGGGCTTT TGGAGATAAG CAACTTAAGC 
    CATATGTGAT TGCGGAGCCA GAAATTCAGG AGGAGGATAT AAGCACATTG 
    GAGTTTATTG TTGTTGCTAG TGATGGACTG TGGAATGTGT TGTCAAACAA 
    GGATGCCGTG GCAATAGTAC GAGACATTTC AGATGCGGAA ACAGCAGCAA 
    GAAAGCTTGT GCAAGAAGGT TACGCACGGG GTAGCTGCGA CAATATCACT 
    TGCATTGTTG TACGATTCGA GGTTTCTTGA GCAAGAACCA AATTCATATT 
    GTTCTTGTTC TATGAATGTA CCATCTTCAG CTGTTGAATA CACTAACATA 
    TTTGGGTTAT ACAATTTTAT AAAAGAAAGA TATATTTAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT1G43900.1 [+] show detail - Protein phosphatase 2C family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther PROTEIN PHOSPHATASE 2C EPSILON 7.9e-122
    HMMPanther Protein phosphatase 2C 7.9e-122
    PatternScan Protein phosphatase 2C, manganese/magnesium aspartate binding site 0
    Gene3D Protein phosphatase 2C-related 3.3e-78
    HMMSmart Protein phosphatase 2C-related 4.9e-91
    HMMPfam Protein phosphatase 2C, N-terminal 1.2e-64
    superfamily Protein phosphatase 2C-related 2e-79

    See the detailed result >

    AT1G43900.1

    Model type
    Protein coding
    Short Description
    Protein phosphatase 2C family protein
    Computational Description
    Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: HOPW1-1-interacting 2 (TAIR:AT4G31750.1); Has 8097 Blast hits to 7992 proteins in 953 species: Archae - 12; Bacteria - 1506; Metazoa - 1655; Fungi - 811; Plants - 2687; Viruses - 9; Other Eukaryotes - 1417 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR