F12318

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12318

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12318

Determination of introduced cDNA(s)

  • RAFL08-16-N03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-16-N03 - Resource: pda04921

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-16-N03 - full reading 
    TGAAGCTTTT TTCTCGCGCC CGCCTCTCTC TCTCTCTCTC TCTCTCTCTC 
    TCTCTCTCTC TCTCTCTCTT CTCCTCTAAC CAAATTTCCC GATGTGAAAA 
    AACAAGTTTC CGATCAACTC AAACCACCGT CACCACTTCT TCTCTCCGAC 
    ATGGCTCCGT CGTTAAGGAA TTTCAACTTC TTTCACCGCT TCTCCACCTT 
    CCTCGTCTTC TCTCTATTCT CCGTCGTTTC TTCCGACGAT CTCCAAGTCT 
    TACTCAAGCT CAAATCATCA TTCGCCGATT CCAATCTCGC CGTGTTCGAT 
    TCCTGGAAAC TGAACTCCGG TATCGGTCCT TGTAGCTTCA TCGGAGTAAC 
    CTGTAATTCT AGAGGCAACG TTACAGAGAT TGATCTCTCT CGTCGAGGTT 
    TATCTGGGAA TTTTCCATTC GATTCGGTTT GTGAGATTCA GAGTCTCGAG 
    AAACTCTCTC TCGGATTCAA TTCACTATCT GGAATAATCC CCAGCGATTT 
    GAAAAACTGC ACGAGTTTGA AGTATTTGGA TCTCGGCAAC AATTTATTCT 
    CCGGTGCTTT CCCTGAGTTC TCATCTTTAA ATCAGTTACA GTTTCTGTAT 
    CTCAACAACA GCGCTTTTTC CGGCGTCTTT CCGTGGAAAT CGCTCCGAAA 
    CGCAACGAGT CTCGTCGTTT TGAGCCTAGG CGATAATCCG TTTGATGCGA 
    CGGCTGATTT CCCGGTGGAG GTTGTTTCTC TGAAGAAACT CTCGTGGCTT 
    TACTTGTCGA ATTGCAGTAT CGCCGGAAAA ATTCCACCGG CGATTGGAGA 
    TTTGACGGAG CTTCGGAATT TGGAGATTTC CGATAGCGGA TTAACCGGAG 
    AGATTCCGTC GGAGATTTCG AAACTTACTA ATCTCTGGCA GTTAGAGCTT 
    TACAACAACT CCTTGACCGG AAAACTTCCT ACCGGATTCG GAAACTTGAA 
    GAATCTGACT TACTTGGACG CTTCAACAAA TCTTCTACAA GGCGATTTAT 
    CGGAGCTTAG GTCTCTGACT AATCTCGTTT CACTACAAAT GTTCGAAAAC 
    GAATTCTCCG GTGAGATTCC GCTGGAGTTT GGTGAATTCA AGGATCTCGT 
    GAATCTCTCT CTGTATACAA ACAAGTTAAC CGGTTCTCTG CCTCAAGGAC 
    TCGGTTCACT TGCTGATTTT GATTTCATCG ACGCATCAGA GAATCTCTTA 
    ACCGGACCGA TCCCTCCAGA TATGTGCAAG AACGGGAAGA TGAAAGCTCT 
    GCTTCTCCTG CAAAACAACC TCACTGGCTC TATCCCTGAG TCCTACGCTA 
    ACTGTTTGAC TCTGCAACGG TTCAGAGTTA GCGAGAACAA CCTCAACGGA 
    ACTGTTCCCG CGGGACTTTG GGGATTACCG AAGCTCGAGA TCATCGATAT 
    AGAGATGAAT AACTTCGAAG GTCCAATCAC CGCGGATATA AAGAACGGTA 
    AAATGCTCGG AGCGTTGTAT CTAGGGTTCA ACAAGTTGTC TGATGAGCTG 
    CCTGAAGAGA TAGGTGACAC TGAATCTTTG ACTAAGGTTG AGCTTAACAA 
    TAACCGGTTT ACCGGGAAGA TTCCTAGCTC CATTGGGAAA CTCAAAGGAC 
    TTAGCAGTCT AAAGATGCAG AGCAATGGCT TCTCCGGTGA GATACCTGAC 
    TCGATTGGTT CGTGCTCGAT GCTCAGCGAT GTCAACATGG CTCAAAACTC 
    GATATCCGGA GAAATCCCCC ACACGCTTGG ATCACTCCCG ACGCTCAACG 
    CTTTGAATCT TTCGGACAAT AAGTTGTCTG GGAGAATCCC AGAGAGTTTG 
    TCGTCTTTAA GGCTTAGCCT TCTTGATCTG TCTAACAACA GATTATCAGG 
    TCGTATCCCT CTGAGTTTGT CATCATATAA TGGTAGCTTC AATGGCAATC 
    CTGGCCTCTG TAGCACGACG ATCAAATCGT TTAACCGGTG CATAAATCCT 
    TCGAGATCGC ATGGAGACAC TCGCGTGTTC GTGTTGTGTA TAGTTTTCGG 
    GTTACTGATC TTGCTAGCGT CTCTTGTGTT TTTCTTGTAC CTGAAGAAAA 
    CAGAGAAGAA GGAGGGACGT TCGCTTAAAC ACGAATCTTG GAGTATAAAG 
    TCATTCCGAA AGATGAGTTT CACTGAAGAT GATATCATTG ATTCAATCAA 
    AGAAGAGAAT TTGATTGGTA GAGGAGGTTG TGGGGATGTG TACAGAGTAG 
    TACTTGGTGA TGGTAAAGAA GTTGCGGTCA AACACATCCG GTGTAGTAGT 
    ACTCAGAAAA ACTTCAGCAG TGCAATGCCG ATTCTCACTG AACGGGAGGG 
    AAGATCGAAA GAGTTTGAAA CAGAGGTGCA AACGCTTAGT TCGATACGAC 
    ACTTAAACGT GGTGAAACTC TATTGTAGCA TCACGAGCGA TGACTCGAGC 
    TTGCTGGTGT ACGAGTACTT GCCTAATGGA AGCTTATGGG ACATGCTTCA 
    CTCTTGCAAG AAGTCGAATC TTGGTTGGGA AACACGGTAT GATATAGCTC 
    TTGGTGCAGC AAAAGGGCTT GAGTACTTGC ATCATGGGTA TGAGAGACCG 
    GTGATTCACC GTGATGTTAA GTCCAGTAAC ATATTGCTAG ATGAGTTCTT 
    GAAACCTAGA ATTGCGGATT TTGGTCTTGC CAAGATTCTT CAGGCCAGCA 
    ATGGCGGTCC AGAGTCCACG CATGTCGTTG CGGGAACCTA TGGCTACATA 
    GCTCCAGAGT ATGGATATGC GTCAAAAGTG ACTGAGAAAT GCGATGTATA 
    TAGCTTCGGG GTCGTGTTGA TGGAGCTAGT CACAGGGAAA AAACCGATAG 
    AGGCAGAGTT TGGAGAGAGC AAAGACATAG TGAATTGGGT GAGCAACAAT 
    CTGAAGAGCA AAGAGAGTGT GATGGAGATT GTGGACAAGA AGATAGGAGA 
    AATGTATAGA GAAGACGCGG TCAAGATGCT GAGGATTGCG ATCATCTGCA 
    CCGCAAGACT TCCTGGACTA AGACCGACGA TGAGGAGCGT GGTGCAGATG 
    ATCGAGGACG CGGAACCTTG CAGATTGATG GGGATTGTGA TCAGCAAAGA 
    GAGTGATGTC AAGGTCAAAG AAATAAGTTG ATGATTGAGG GACCAAGTCA 
    CTCTTTTGGG GTCTGTTTTG TTCACAATGA AACTTAGGGA GATCGAGTAA 
    AGTGGATCAT CTAAATCTAT TAAGACGTAC GTAAGAGTTT AGATGGAGAG 
    TGTTGTAATA CTAGTACTCC GGGTTATGAA ATCATAGGTG TTGTAACGAT 
    CTCATTGTAA ACTATTTTCT TGTAATTGTA GAATTTTAAG G

    Gene models with high sequence identity

    1. AT1G09970.1 [+] show detail - Leucine-rich receptor-like protein kinase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Serine/threonine-protein kinase-like domain 6.4e-47
    HMMPfam Leucine-rich repeat 0.63
    HMMPfam Leucine-rich repeat 0.66
    HMMPfam Leucine-rich repeat 0.64
    HMMPfam Leucine-rich repeat 0.81
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 3.2e-10
    HMMSmart Serine/threonine-protein kinase domain 1e-35
    HMMSmart Tyrosine-protein kinase, catalytic domain 5.3e-21
    Gene3D no description 4.3e-38
    Gene3D no description 1.6e-48
    Gene3D no description 6.1e-14
    Gene3D no description 1.3e-47
    superfamily Protein kinase-like domain 9e-73
    superfamily L domain-like 5.8e-57
    superfamily RNI-like 1e-47
    PatternScan Serine/threonine-protein kinase, active site 0
    ProfileScan Protein kinase, catalytic domain 38.775
    HMMPanther LRR RECEPTOR-LIKE KINASE 2.7e-240
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.7e-240

    See the detailed result >

    AT1G09970.1

    Model type
    Protein coding
    Short Description
    Leucine-rich receptor-like protein kinase family protein
    Curator Summary
    RLK7 belongs to a leucine-rich repeat class of receptor-likekinase (LRR-RLKs). It is involved in the control of germination speed and the tolerance to oxidant stress.
    Computational Description
    LRR XI-23; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid autophosphorylation; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat protein kinase family protein (TAIR:AT3G19700.1); Has 209037 Blast hits to 140396 proteins in 4701 species: Archae - 173; Bacteria - 22554; Metazoa - 63531; Fungi - 11010; Plants - 85931; Viruses - 478; Other Eukaryotes - 25360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR