F12515

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F12515

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F12515

Determination of introduced cDNA(s)

RAFL09-35-B15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-35-B15 - Resource: pda06093

full reading [+] show sequence

ATCGTCCTCA CCGGAACGCG CCTACTCTCT TTCCACATCG TACGTTTCCT 
CTCTCTAAAT TCTTCAACTT TAAAGGTGAT AAAAATTGAA TCTTTCCCAC 
AACCCACAAG AAAATTCGAA TCCTTTCTCT CTTTCTATCT CTTAGTCACG 
CTTTCGATCA GCAATCTCCT CGAATTCTGG TTGGTTCCGT CTCTGTTTTC 
TGTACACAAA GCCCTGCTGC TGTTGATACA CGTGAGCCGC CATTAATGCC 
CCTTTGTTTT CTTCTTCCAG CTGATTTAGG AAGTTGGTGA TCAAATTACA 
TCTAGTGTTT GTTTCCGCCA GCTGAAGTGA ATCAAAATGT TTAGTTTTGG 
CCGAGCAAGA AGCCAAGGGA GGCAAAACAG ATCTATGTCT CTTGGAGGAC 
TGGATTATGC AGACCCCAAG AAGAAAAACA ATTACTTGGG AAAGATTCTT 
TTGACAGCTT CTCTTACAGC CTTGTGCATT TTCATGCTCA AGCAATCTCC 
AACATTCAAT ACTCCTAGCG TGTTTTCTCG ACATGAGCCA GGGGTTACAC 
ATGTTTTGGT CACTGGTGGT GCTGGGTATA TTGGTTCACA TGCAGCTCTA 
AGGCTTCTAA AGGAATCATA TCGAGTAACC ATTGTGGACA ATCTATCACG 
GGGCAATCTC GCTGCAGTCA GGATTTTGCA AGAACTATTT CCGGAACCTG 
GAAGGCTTCA ATTTATTTAT GCTGATCTTG GAGATGCCAA AGCTGTCAAC 
AAGATATTCA CAGAGAATGC CTTTGACGCT GTGATGCATT TCGCTGCTGT 
TGCATATGTT GGGGAAAGCA CACAATTCCC TCTTAAGTAT TATCACAATA 
TTACATCGAA CACTTTGGTA GTATTAGAGA CAATGGCTGC TCATGGAGTA 
AAGACTTTGA TATATTCAAG CACTTGTGCA ACGTATGGGG AGCCTGATAT 
TATGCCAATT ACAGAGGAAA CTCCTCAGGT GCCAATCAAC CCATATGGTA 
AGGCCAAGAA GATGGCAGAA GATATCATTT TGGATTTCTC GAAAAACTCA 
GATATGGCAG TTATGATCCT AAGATATTTC AATGTGATTG GGTCCGATCC 
AGAGGGCAGA TTGGGTGAAG CCCCAAGACC TGAGCTGCGA GAGCATGGAC 
GCATCTCCGG TGCTTGTTTT GATGCAGCAC GTGGCATCAT GCCTGGCCTA 
CAGATCAAAG GAACAGACTA CAAAACCGCT GATGGAACTT GCGTACGGGA 
TTACATTGAT GTCACTGATT TGGTTGATGC TCATGTTAAA GCTCTTCAAA 
AGGCAAAACC ACGCAAAGTT GGAATCTACA ATGTTGGCAC CGGGAAAGGT 
AGCTCGGTGA AAGAGTTTGT TGAGGCGTGC AAGAAAGCAA CTGGTGTTGA 
GATCAAGATC GACTATTTGC CTAGACGTGC AGGTGATTAC GCTGAGGTTT 
ACAGTGATCC AAGCAAGATT AGGAAGGAAC TTAACTGGAC AGCTAAGCAC 
ACTAATCTCA AAGAGAGTCT TGAGACTGCA TGGAGATGGC AGAAGCTGCA 
CCGTAATGGC TATGGCTTAA CAACCTCATC GGTCTCGGTT TACTGACTTT 
GTTCATTCCT TTGGTGATGG ACGGAGATTT TGATTCCAGA TGGTATTGAG 
GAGAGAAGCG TAGGAGATGA TGATGGTTTA TATATAAATA TAACACAAGA 
TATATTATCC ATATTATGAA AAAATGATAT CACATGACGA GATTTTTGAT 
TGATATTCAT TTTGTAATGG CTTTAGGTTC TTTTAGGAAG CAGCCATTCA 
TTAGTATATG TACCTCTCAC AATATTTATT GATTAGTCTT AATAATATAT 
AGCATTCCTG GCT

Gene models with high sequence identity

AT1G30620.1 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	NAD-dependent epimerase/dehydratase	3e-52
HMMPanther	UDP-glucose 4-epimerase	2e-158
HMMPanther	NAD DEPENDENT EPIMERASE/DEHYDRATASE	2e-158
superfamily	NAD(P)-binding domain	8.2e-92
Gene3D	NAD(P)-binding domain	2.7e-59
Coil	coiled-coil	0
HMMTigr	UDP-glucose 4-epimerase	1.2e-147

See the detailed result >

AT1G30620.1

Model type: Protein coding
Short Description: NAD(P)-binding Rossmann-fold superfamily protein
Curator Summary: encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
Computational Description: MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 42820 Blast hits to 42812 proteins in 2971 species: Archae - 775; Bacteria - 25948; Metazoa - 715; Fungi - 615; Plants - 1158; Viruses - 34; Other Eukaryotes - 13575 (source: NCBI BLink).
Link: InterPro Scan - TAIR