F13007

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13007

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F13007

Determination of introduced cDNA(s)

  • RAFL06-69-L03 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-69-L03 - Resource: pda03328

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-69-L03 - full reading 
    AACATCAATC TCACAGGAAG GAAAGAAAGA AAGAAAGACG AGCCCTTTTT 
    TCTTTCTAAA AATAGAAATA TGTCTCTAAA AGCCATTCAT GTCTCGGAAG 
    TGCCAAGCCT CGACCACTTC CCTGAGAACC CGTCGCTCAT TTGCTCCTCT 
    CGCAAAGCGA ATAACAAGTT TGTGGTGGTT GGCCATAGAG GACACGGCAT 
    GAACATGTCG CAGTCGCCGG ATCTAAGGTT CTCTGCTCTC AAGGAGAACT 
    CCATCCTCTC CTTTAATGCC GCTTCAAAAT TCCCTCTCGA CTTTATCGAA 
    TTCGATGTTC AGGTCACCAG AGATGGCTGC CCAATCATAT TCCACGACGA 
    CTTCATCTAC TCCGAGGAAC AGGGAGTGGT GTACGAGAAG AGGGTCACGG 
    AGGTTTGCTT GTCGGAGTTC ATGTCCTACG GGCCACAGAG GGATACAGGC 
    AAGACAGGAA AGCCTTTGCT GAGAAAGTCA AAGGAAGGGA AGATCCATAA 
    GTGGAGCGTC GCAACCGACG ACTCTTTCTG TACTCTCCAA GAGGCTTTTG 
    AGAAAGTAGA GAATCCAAAC CTCGGTTTCA ACATCGAACT CAAGCTTGAC 
    GACAACGTCT TCTATTCCTC CGATCACCTC TCCCGTCTTC TCCTCCCAAT 
    CTTGCAGGTC GTGTCTGATA TCGGAAACGA CAGAACTATC ATCTTCTCCA 
    GCTTCCATCC TGATGCAGCC CTTCTTGTCA GGAAGTTGCA GACCACCTAC 
    CCCGTATTCT TCTTGACCAA CGGAGGAACT GAGATGTACC ACGACACGAG 
    AAGGAATTCG CTTGAGGAAG CAATCAAAGT ATGTTTAGAA GGAGGCCTCC 
    AAGGGATTGT CTCGGAGGTG AAGGGAGTAT TCCGCAACCC CGCTCTTGTC 
    AACAAGATAA AAGAATCCAA GCTCTCTCTG ATGACATACG GAAAGCTAAA 
    CAATGTAGCC GAGGCGGTTT ACATGCAGCA TTTGATGGGG ATAGAGGGAG 
    TGATAGTTGA TCATGTGGAG GAGATAACAG AGGCGGTGAG GGAGATGATG 
    AAGCCATCCA ACAGAGATGC TGATGGTACT AAGCCAAAGC CTAACTTCTC 
    TGACAGAGAG CTCTCCTTTC TTCTCAAGCT CATTCCCGAG TTGATACAAC 
    ACTAAAACTA TCTCTTTTAG TTAGGATCTC TAGTTTCCCA AAATGTGATA 
    GTGTTTTGTA TCGGGAAAAT TTGACAATGT GGGTGCTGCT ATCATGATTC 
    ATGAGGTGAA AGCCCAAATG TTATGGAATA TATCTGTTTG CAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT3G02040.1 [+] show detail - senescence-related gene 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 9.6e-33
    HMMPanther RELATED TO MULTIFUNCTIONAL CYCLIN-DEPENDENT K 3.1e-94
    superfamily PLC-like phosphodiesterase, TIM beta/alpha-barrel domain 1.3e-37
    HMMPfam Glycerophosphoryl diester phosphodiesterase 1.7e-60

    See the detailed result >

    AT3G02040.1

    Model type
    Protein coding
    Short Description
    senescence-related gene 3
    Computational Description
    senescence-related gene 3 (SRG3); FUNCTIONS IN: phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity; INVOLVED IN: glycerol metabolic process, lipid metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (InterPro:IPR017946), Glycerophosphoryl diester phosphodiesterase (InterPro:IPR004129); BEST Arabidopsis thaliana protein match is: PLC-like phosphodiesterases superfamily protein (TAIR:AT5G41080.1); Has 1727 Blast hits to 1696 proteins in 532 species: Archae - 28; Bacteria - 1003; Metazoa - 245; Fungi - 173; Plants - 101; Viruses - 2; Other Eukaryotes - 175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR