F13208

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13208

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13208

Determination of introduced cDNA(s)

  • RAFL06-74-J24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-74-J24 - Resource: pda03509

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-74-J24 - full reading 
    ACTGAGAGAG AGGATTACGA ATACGAGATC GGAGACATGG CGGAGAGTCA 
    CGGTGGTGGT GGTGGTTGCT GTCCGCCGAT GGATCTGATG CGGTCAGAAC 
    CGATGCAACT CGTTCAAGTC ATTGTTCCCA TGGAATCTGC TCATCTTACC 
    GTCTCTTATC TCGGCGATCT CGGTCTCGTC CAGTTCAAAG ATCTTAATTC 
    TGAGAAGAGC CCATTTCAAA GGACTTATGC TGCTCAGATA AAAAGATGTG 
    GGGAAATGGC ACGAAAAATA CGTTTCTTTA AAGAGCAAAT GTCAAAGGCT 
    GGAGTTACTC CCAAAGAGAC CCTAGATAGA GAAAATGATA TTGATTTGGA 
    TGATGTAGAG GTAAAGCTTG AAGAGCTTGA AGCTGAACTT GTTGAAATCA 
    ATGCTAATAA CGACAAGTTG CAGCGGTCTT ATAATGAACT TGTGGAGTAC 
    AAGCTCGTTC TTGAGAAGGC TGGTGAGTTT TTTGCTTCAG CCCATAGAAG 
    TGCTACCGCT CAACAGAGTG AGATAGAAAC AGAACAAGTG GGTGAAGACC 
    TCCTGGAGGC TCCTCTGTTG CAGGAAGAGA AGTCTGTTGA TCCCACAAAG 
    CAAGTAAAGC TTGGATTCCT CACTGGACTA GTGCCTCGTG AAAAGTCTAT 
    GGTGTTCGAG AGGATCCTAT TTCGTGCAAC TAGGGGCAAC ATCTTCATAC 
    GACAGTCTGT CATTGAGGAG TCTGTTGTTG ATCCCAACTC TGGGGAGAAG 
    GCTGAGAAAA ATGTATTTGT CGTCTTCTAT TCTGGGGAAA GAGCAAAAAG 
    CAAAATTCTT AAGATATGTG AAGCTTTTGG GGCCAATCGC TATCCTTTCA 
    GTGAAGATCT GGGCAAACAA GCTCAAATGA TGACTGAGGT TTCAGGTCGG 
    TTATCAGAGC TTAAAACTAC CATAGGTGCT GGGTTGGATC AGCGCAACAT 
    TCTTTTAGAG ACCATTGGAG ATAAGTTTGA GCAATGGAAC CTCAAGATTC 
    GCAAAGAAAA AGCTATCTAT CACACCTTGA ACATGCTTAG TCTTGATGTG 
    ACTAAGAAGT GCCTTGTGGG TGAAGGCTGG AGTCCTGTCT TTGCAGCAAC 
    AGAAATTCAA GATGCATTGC ATCGTGCTGC GGTTGACTCC AATTCTCAAG 
    TTGGATCAAT TTTCCAAGTC CTGAGGACCA AAGAGATGCC TCCGACTTTT 
    TTCCGCACAA ACAAATTTAC TACTGCTTTC CAGGAAATTG TTGATGCATA 
    CGGTGTGGCC AAATATCAGG AGGCCAATCC TAGTGTATTC ACAATTGTTA 
    CCTTCCCCTT CCTGTTTGCT GTTATGTTTG GTGACTGGGG TCATGGAATC 
    TGCCTGCTGC TTGCAACTAT GTATTTAATA TTGAGAGAAA AGAAACTTTC 
    CAGCCAGAAA CTTGGGGATA TTATGGAAAT GGCTTTTGGT GGCCGTTACG 
    TTATTTTTAT GATGTCACTA TTCTCAATAT ACACTGGTTT AATCTACAAC 
    GAGTTCTTCT CTATACCATA TCCATTGTTT GCTAGCTCAG CATACGATTG 
    CCGTGATGTC TCTTGCAGTG AGGCTACTAC AATTGGTCTG ATCAAAACCC 
    GAGACACTTA TCCATTTGGT GTGGATCCTG TGTGGCATGG TACCCGCAGT 
    GAGCTACCAT TCCTAAATTC GCTTAAGATG AAAATGTCAA TTCTTATTGG 
    AGTTGCACAA ATGAACCTCG GAATCATAAT GAGCTTCTTT AATGCAAAAT 
    TCTTCAAAAG TGCTGTAAAC ATATGGTTCC AGTTCGTTCC CCAGATGATA 
    TTCTTGAACT GCTTGTTTGG CTATCTTTCG GTCCTCATCA TCATAAAGTG 
    GTGCACTGGT TCTCAAGCAG ATTTATATCA CGTAATGATC TACATGTTTC 
    TGAGCCCTAT GGATGATTTA GGAGAGAATC AGCTGTTCCC TAACCAGAAA 
    ATAGTACAGC TCACATTCCT CTTTCTGGCT CTGGTTTCTG TGCCGTGGAT 
    GTTGTTGCCA AAGCCATTCA TCCTGAAAAA ACAACATGAA GCTAGACATC 
    AAGGACTGTC ATATGCACAG CTTGACGAGA CAGATGAGAG TCTTCAAGTA 
    GAAACAAATG GGGGAGGACA TGGACACGAA GAGTTTGAAT TCAGCGAAAT 
    CTTTGTGCAC CAACTCATTC ACACCATTGA GTTTGTGCTT GGAGCTGTTT 
    CCAACACTGC TTCTTATCTT CGTCTCTGGG CTCTCAGTCT CGCCCACTCG 
    GAGTTGTCGT CAGTCTTCTA TGAGAAGGTC CTTCTTATGG CTTGGGGTTT 
    CAACAATGTC TTCATCTGGA TCGTTGGAAT TCTCGTCTTC ATATTTGCGA 
    CTGTGGGAGT GCTTCTTGTG ATGGAGACAT TGAGTGCATT CCTTCACGCG 
    TTGCGTCTTC ACTGGGTGGA GTACCAGAAC AAGTTCTACG AAGGCGATGG 
    TTACAAGTTT GCTCCTTTCA CTTTCACTCT CGTCGGAAAC GAAGACGAGT 
    GATTGATGTT CCGATGTATC AGAAATGACT TCTTCTGCGT GTGCATATAT 
    AAGGTATGGG AAGGATTCTG AGTTCCTTCC CTAATCATTT TTTTAAAAAA 
    TTTAAGAAAA TAAATTTGGA TGTTTTTTCT G

    Gene models with high sequence identity

    1. AT2G21410.1 [+] show detail - vacuolar proton ATPase A2
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VACUOLAR PROTON ATPASE 0
    HMMPanther ATPase, V0/A0 complex, 116kDa subunit 0
    Coil coiled-coil 0
    HMMPfam ATPase, V0/A0 complex, 116kDa subunit 1.1e-243

    See the detailed result >

    AT2G21410.1

    Model type
    Protein coding
    Short Description
    vacuolar proton ATPase A2
    Curator Summary
    Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. Required for efficient nutrient storage but not for sodium accumulation.
    Computational Description
    vacuolar proton ATPase A2 (VHA-A2); FUNCTIONS IN: ATPase activity, hydrogen-translocating pyrophosphatase activity; INVOLVED IN: cellular response to nutrient levels, ATP synthesis coupled proton transport; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, 116kDa subunit (InterPro:IPR002490); BEST Arabidopsis thaliana protein match is: vacuolar proton ATPase A3 (TAIR:AT4G39080.1); Has 2867 Blast hits to 2293 proteins in 720 species: Archae - 334; Bacteria - 1213; Metazoa - 663; Fungi - 202; Plants - 115; Viruses - 0; Other Eukaryotes - 340 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR