F13247

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13247

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13247

Determination of introduced cDNA(s)

  • RAFL05-19-G13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-19-G13 - Resource: pda07435

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-19-G13 - full reading 
    CTGGCTGCAA AAATATCATC AATAGCGAAA AGTCGCTTCT TTTTTCTTCT 
    TCCAAAATCT TTAATTTTGT GAAACCGAAG AGATAAGACG TGGAGAAAAG 
    CAGACGTCTC TGTTGTTTGT TTTTGATTCA TCGGGTTCTA AGGATTTGTC 
    TGTTTCCAAG ACACAAACTT TGGATTCTCT TCTCTTCCTG TTCGTCTTCT 
    CTTGTCTTGA TCCTTTTGTT ATCATCATCA TCTCTTCATC GAGAGAAGAG 
    AGACGAGATT AGGGATTTAA GTTAAGGAGG ATGTATTATC AGTTGACCAA 
    GTCTTCTTAC AGAGACTCTT TGAAGATTCT GGAGGCTGAT ATTGAGCACG 
    CCAATGGACT GTGAGTCATC CTCTGATTCT TTCTGGGTTC TTTGATTTTT 
    ACTGGGTTTA GGGTCTTTAG TATCGATTGT TATAGTTGGC TTCGATGATT 
    TAGGGTTTAG GGCCCCACAA TTTTACATTT TCGGTCGTTA TCACGAACTT 
    AGATTATTAA AAATCGAAAC TTTGCAGAAA TGGTCAAAAA ATTGCTAAAT 
    TTTGTGGCAT GCGTGGTGTG GTCTTGATGC ATATGTTGTC TGAAGAAATG 
    GGTTAAATGT GATTAGAAGG ATGGTAACTG AATAGTCTCA CAATTTGTAT 
    ATCTGTGGTG TGGTATTGAT GCATATGTTG TCTGTGGAAA TGGTTTATGT 
    GATTCGAAGG ATATAGTAAC TGCTTAGTCT CAGAATTGGT ATCTGTGTGG 
    TTTGTTCTTC AGGCATATGT TGTCTGAAGG GATGGGTTAT GTTAGAAGGA 
    TTAGTGTAAT GACTGATTAC TCTCAAATTT GATTCAGGGC TGCTGAGATT 
    CCAATGGGAA AGAGCGGTGT GCGACTTCAG ATGAAATTGG TGTGCAGCAA 
    TTTGGCTCCA TTCTTCATAT TCCTGCTACA ATGGATGGAT TTCTCATGTC 
    TGCTTCCAAG ATATTTTGAT TTCTTCCACA TACTCATATA CAAGGTTGTT 
    ACCGCATACA TAGATATCGA GTTGTGTGTG TGTGTGTGTG AAATGGTAGA 
    TTCCCTGATA GTTTCTCTCC TTTCCTCTTG GCTTGTTTGT TTTATAGGTG 
    TCTTCTTTGT CTTGTACAGG TACGTGCTGA TGGGCGGTGG AATCGATCTA 
    GGTACGGAAG GAAAGCTACG ATTAGGGAGT TTTACGGTGT TATATTACCA 
    TCACTTGAGC GACTTCATAT CAACTTTGCT GACTTACCGG ACGAAAGCTT 
    GTGGTATCCG AATCCAAAAG CCATCACCAA GAAGCAGTAT GACATTGAAG 
    GTAGCAGATA CATGAATAGC ATTGACTTGG AAAGAGAAGA CGAATGCGGG 
    ATTTGCTTAG AGCCTTGCAC CAAAATGGTG TTGCCAAACT GTTGTCATGC 
    CATGTGCATC AAATGTTACC GTAACTGGAA CACAAAGTCG GAGTCATGCC 
    CGTTTTGTCG TGGCAGCATC AAGAGAGTGA ACTCAGAGGA TCTGTGGGTG 
    CTAACTTGCG ATGAAGATGT GGTGGATCCA GAGACGGTCA CCAAAGAGGA 
    TCTTCTTCGG TTCTACCTCC ACATCAATAG CCTTCCTAAG GATTATCCAG 
    AAGCGGCCTT CTTAGTCTAC AACGAGTACT TGATATGATT TTATCCCGAA 
    ACATAAATAC GGGTGTACAG AGGGAGAGAG TGATCCCAGA CCTTTGATTA 
    AGTGTACATA AGAATCTGGT GATCCATTAA TGTTCCTTCG TTTTAGATTA 
    TGATTTATGA AGATTGTCAT AATCTTAATG TGTACCCCTT TTATTATCAA 
    AGATCAAATG AGAAAGATGA TCTTCGAAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G24440.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Zinc finger, RING-type 11.722
    superfamily RING/U-box 1.8e-12
    HMMSmart Zinc finger, RING-type 0.00084
    PatternScan Zinc finger, RING-type, conserved site 0
    Gene3D no description 8.2e-06

    See the detailed result >

    AT1G24440.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G13195.1); Has 869 Blast hits to 869 proteins in 155 species: Archae - 0; Bacteria - 0; Metazoa - 288; Fungi - 71; Plants - 339; Viruses - 31; Other Eukaryotes - 140 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR