F13508

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13508

Determination of introduced cDNA(s)

  • RAFL02-08-H09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL02-08-H09 - Resource: pda02254

    full reading [+] show sequence

    Nucleotide sequence: RAFL02-08-H09 - full reading 
    GAGGAGAAGA TAAATCCGAT CTAGGTCTCT TCTTCCCCAA TCTCTCTGTG 
    TCTCTCTCGA TCGAAGAAAG AAGACAATGG ACAAAGGCAA AGCAGTGATG 
    GGTACTGGTC GGAGATGGGC CGTCGAATTC TCCGATCAAT CTACTGTTCC 
    ATCTTCCCGT GACATCCTCG ATCCACCTGG CTTCTCTCGT GCCTCTCAGG 
    AACAGGATGA TTCAGCAAAC AGCCGCCAAA AGAAAGACGC TGAAGCTACT 
    TGGAAACTTC AGAAAGCGTG GGAAGTAGCG CAATCTCCAT TTAAGAATTT 
    GATGATGATG GGTTTCATGA TGTGGATGGC TGGAAACACA GTTCATCTTT 
    TTAGTATTGG TATTACTTTC TCTGCTCTTT GGCAGCCTAT CAGTGCTCTT 
    CAGAGTGTTG GAAAGATTTT TGAGCCATTC AAGGATAACA AAGTGGAACT 
    ACTTATGCCG AAATTAGTGT TCCTTGCCCT AAACCTTGGA GGGCTAGCTT 
    TGGGTGTCTG GAAGCTTAAC ACTTTGGGGC TTCTTCCAAC ACATGCATCA 
    GATTGGGTTT CATCTCTACC CCCTCCTCAG GAAGTTGAAC ACTCGGGCGG 
    AGGATTTGTT TTCCACTGAT GAATCAGCGT CTCTTGTATT TTAAAATAAT 
    CCGCTAAAAC CGCGCGACAA CGACAACACT TTTGTGAGAT AACTGCAACA 
    GTTACTTAAG TGATATGAAC CTCCCTCATC TTATGATATT CTTGTAGCAT 
    TTTCAAAACT CAGAAACCAT AGTTTTTACA CTTTTTAGTA TGATGCTCAT 
    TGTTCATCAT AACTATGAAT GTATTATTGG CACTGAAGGG ACCTTATCTC 
    CC

    Gene models with high sequence identity

    1. AT5G10780.1 [+] show detail - CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85...
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Protein of unknown function DUF1077 2.9e-41
    HMMPanther SUBFAMILY NOT NAMED 8e-142
    HMMPanther Protein of unknown function DUF1077 8e-142
    HMMPIR Uncharacterised conserved protein UCP017207, transmembrane protein 85 2.2e-84

    See the detailed result >

    AT5G10780.1

    Model type
    Protein coding
    Computational Description
    CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP017207, transmembrane protein 85 (InterPro:IPR016687), Protein of unknown function DUF1077 (InterPro:IPR009445); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR