F13536

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13536

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13536

Determination of introduced cDNA(s)

  • RAFL16-97-F04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-97-F04 - Resource: pda10418

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-97-F04 - full reading 
    GTTTCTTCTT CCTTCCTTCT TCTTCTTCTT CTTCTCTAAT TCTGGTTTCA 
    AAAATCTTCT TTTTCTTTTC TTTAGTTGGA TAATTTAGTG ATTATAATTA 
    TTACAATCAG CTTTTGCGCC GCAGAGTAAA CAAAAAAAAA GCTCGTTGGC 
    TTTGTTCCTT TGAATCTGTT GATTGTTTTA TCGAGTGAGA AATGGGTAAT 
    TGCTTAGATT CATCAGCTAA AGTGGATAGT AGCAGCCACA GTCCTCATGC 
    TAATTCTGCT TCATTGAGCT CAAGAGTTTC TAGCAAGACA AGTCGTTCCA 
    CAGTTCCTTC AAGCTTAAGC ATAAATTCTT ACAGCAGTGT TGAGTCTTTA 
    CCTACACCAA GAACAGAAGG AGAGATTTTG TCATCACCAA ATCTTAAAGC 
    TTTCACCTTT AACGAGCTCA AGAACGCTAC GAGGAACTTT CGACCCGATA 
    GTCTTTTAGG TGAAGGAGGT TTTGGCTATG TGTTTAAAGG GTGGATTGAT 
    GGAACTACTT TAACTGCTTC AAAACCGGGT TCTGGAATTG TTGTTGCGGT 
    TAAGAAGCTT AAAACTGAAG GTTATCAAGG TCATAAAGAG TGGTTGACTG 
    AAGTGAACTA TCTTGGTCAG CTTAGTCACC CAAATCTCGT CAAACTTGTT 
    GGGTATTGTG TAGAGGGAGA AAACCGGTTA CTGGTATACG AGTTCATGCC 
    AAAAGGAAGC TTGGAGAATC ATCTTTTTAG ACGTGGCGCT CAGCCACTTA 
    CGTGGGCTAT AAGGATGAAA GTTGCAATAG GGGCTGCCAA AGGACTTACT 
    TTTCTCCATG ATGCGAAATC GCAAGTGATA TACAGAGACT TTAAAGCTGC 
    TAACATTCTA CTTGATGCGG AATTCAACAG TAAACTTTCA GACTTCGGTC 
    TAGCTAAAGC AGGTCCTACC GGTGACAAGA CTCATGTGTC CACACAAGTC 
    ATGGGTACTC ACGGATATGC TGCCCCGGAA TATGTAGCAA CAGGTCGATT 
    AACTGCTAAG AGCGATGTAT ACAGTTTCGG TGTGGTACTA CTGGAATTAC 
    TCTCAGGACG AAGAGCGGTG GACAGATCAA AAGTGGGAAT GGAACAGAGT 
    CTAGTGGACT GGGCAACACC GTATCTCGGC GACAAGCGGA AGCTCTTTAG 
    AATAATGGAC ACGAGATTAG GCGGTCAGTA TCCTCAAAAA GGAGCATACA 
    CAGCAGCTAG TCTTGCATTG CAATGCTTAA ACCCTGACGC AAAACTGAGA 
    CCGAAAATGT CGGAAGTTTT GGCCAAATTA GATCAGCTTG AATCAACGAA 
    ACCTGGAACT GGAGTTGGAA ACAGACAAGC ACAGATTGAT TCCCCAAGAG 
    GTAGTAATGG ATCTATTGTA CAGAAATCTC CAAGGAGGTA TAGTTATGAT 
    CGGCCTCTCT TACACATAAC TCCTGGTGCT TCTCCTTTGC CTACTCACAA 
    TCACTCTCCT CGTGTAAGAT AGGAATCACT GTAATAGTTA TCTTTTGTCT 
    TTGTCTGTTG TATGCTGTTT GTAAAATGTG TTGTGTAATG GACCAAAGTT 
    TCATTCTTGG CTCAATTTAT AAAATTTGGT TTCAGC

    Gene models with high sequence identity

    1. AT2G02800.1 [+] show detail - protein kinase 2B
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Protein kinase, catalytic domain 37.771
    Gene3D no description 5e-23
    Gene3D no description 9.8e-49
    superfamily Protein kinase-like domain 1.7e-78
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.1e-168
    HMMPfam Serine-threonine/tyrosine-protein kinase 6.2e-47
    HMMSmart Serine/threonine-protein kinase domain 3.1e-39
    HMMSmart Tyrosine-protein kinase, catalytic domain 2.1e-26
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0

    See the detailed result >

    AT2G02800.1

    Model type
    Protein coding
    Short Description
    protein kinase 2B
    Curator Summary
    Encodes protein kinase APK2b.
    Computational Description
    protein kinase 2B (APK2B); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: protein kinase 2A (TAIR:AT1G14370.1); Has 113663 Blast hits to 112197 proteins in 3955 species: Archae - 101; Bacteria - 13127; Metazoa - 42007; Fungi - 9244; Plants - 32902; Viruses - 370; Other Eukaryotes - 15912 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR