F13708

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F13708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F13708

Determination of introduced cDNA(s)

  • RAFL06-72-D22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-72-D22 - Resource: pda03389

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-72-D22 - full reading 
    AGTAATAATC AAGTCAGAGC CGGCGAAGCT TGCCGTTTCC GCCGTTGGAG 
    GAGAGTTTTT ACTGTTGCTG TCCTGTTGAC ATTTTGAGAC ATGAAATGAT 
    CTTGGGTTGA TGTTTGTATG GTAGCAGAGG AATAGTAGTC ATGAAGCTTA 
    TTTCACTTGT TAGAAACGTT CGTTCTCGCC AATGTCAACC GGAAGTAATC 
    TGGTCTGTGC AAGTTCGTTT CTTGCAGCAA GACTCTGTCT CGAAAGCTAA 
    ACCCAAGAAA TACAAATACC CGTCAGTTTA TGATCCGTAT GGTCCTAGAC 
    CCCAGCCTTC AAGCAAAATC ATGGAGCTAG CTGAGCGTAT AGCTGCTTTA 
    TCTCCAGAAG AAAGAAAACA GATTGGTCCT GCACTCAATG AACACCTGAG 
    GCTTCCAAAA CAACAGATGA TTTCATCGGA CGGCATTGGA GCAAAACAAG 
    ATACCGGAGC TGGGAATGTA GAGGAGAAGA AGGAGAAGAC GGCTTTCGAT 
    GTGAAGTTGG AGAAGTTTAA TGCATCTGAT AAGATCAAAG TGATAAAAGA 
    AGTGAGAACG TTCACAAGTT TGGGTCTGAA GGAAGCGAAA GAGCTTGTGG 
    AGAAAGTCCC GGCTATTCTT AAACAAGGTG TGACAAAGGA AGAAGCTAAT 
    GAAATCATAG CCAAGATCAA AGCTGTTGGT GGAATCGCAG TTATGGAGTA 
    GGTGACTTTT GACACTTCGA TTGTTTTTTT GTTTGATTCA CTATTTGGTA 
    TTGTGATCAC ATCTTGGTAC TTAAGGTAGA TGTTTTGTAA TAACAAATCG 
    ATTACTTGAC ATTGAGTTTC AAAAAAAAAA AAAAAA

    Gene models with high sequence identity

    1. AT3G06040.1 [+] show detail - Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Ribosomal protein L7/L12, C-terminal 8.3e-22
    Gene3D Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 2.9e-19
    BlastProDom Ribosomal protein L7/L12, C-terminal 2e-21
    HMMPanther Ribosomal protein L12, chloroplast 2e-95
    HMMPanther RIBOSOMAL PROTEIN L7/L12 2e-95
    superfamily Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like 5.1e-21

    See the detailed result >

    AT3G06040.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
    Computational Description
    Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L12, chloroplast (InterPro:IPR015608), Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (InterPro:IPR014719), Ribosomal protein L7/L12, C-terminal (InterPro:IPR013823); BEST Arabidopsis thaliana protein match is: Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like (TAIR:AT1G70190.2); Has 8332 Blast hits to 8332 proteins in 2728 species: Archae - 0; Bacteria - 5601; Metazoa - 194; Fungi - 132; Plants - 253; Viruses - 0; Other Eukaryotes - 2152 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR