F14235

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14235

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14235

Determination of introduced cDNA(s)

  • RAFL05-13-O08 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-13-O08 - Resource: pda09332

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-13-O08 - full reading 
    GTCCTCCGCT TTTCCATTTT ACTCTTCTTG TATGTTTCTG TCTTCTTACT 
    CAACTTTTGC TTCAGGCTTC GTCTCTTTTG CAATTTTTGA GTTAGCCAAG 
    TGCTCAAGGG AGATACATAA TACCTGAAGA TGTCCAAGGC AAGTGATGCC 
    GTCAGAGAAC CATTGGTGGA CAAGAATATG GCTGGATCAA AACCAGACCA 
    GCCGTGGATG GTTTATCTCA GCACATTCGT TGCGGTCTGT GGTTCTTTTG 
    CGTTCGGTTC TTGTGCGGGA TACTCTTCAC CTGCTCAGGC TGCAATTAGG 
    AATGACCTTT CATTGACTAT AGCTGAGTTT TCACTCTTTG GTTCTTTACT 
    AACTTTTGGC GCAATGATCG GTGCTATAAC AAGCGGGCCT ATAGCTGATT 
    TAGTTGGAAG AAAGGGGGCG ATGAGAGTTT CCTCTGCATT TTGTGTAGTC 
    GGGTGGCTAG CAATCATCTT TGCCAAGGGA GTAGTGGCTC TGGACCTTGG 
    AAGACTGGCA ACGGGATATG GAATGGGAGC ATTTTCCTAT GTGGTGCCAA 
    TCTTTATAGC AGAAATTGCA CCTAAAACTT TCAGAGGGGC TCTAACCACA 
    CTGAACCAGA TTCTGATCTG CACTGGAGTG TCGGTTTCCT TCATCATAGG 
    CACACTAGTG ACGTGGAGAG TCTTGGCATT AATAGGAATC ATCCCATGCG 
    CTGCCTCCTT CCTTGGCCTC TTTTTTATCC CTGAGTCTCC AAGATGGCTG 
    GCAAAAGTGG GGCGTGATAC GGAGTTTGAA GCTGCACTGA GGAAGCTCCG 
    TGGGAAGAAG GCTGATATTT CGGAGGAGGC AGCAGAGATC CAGGATTATA 
    TCGAAACTCT GGAAAGGCTA CCGAAAGCCA AGATGCTGGA TTTGTTTCAG 
    AGGAGATACA TACGCTCTGT TCTTATAGCT TTCGGGTTGA TGGTGTTTCA 
    GCAGTTTGGA GGAATCAACG GAATATGTTT CTACACAAGC TCGATATTTG 
    AGCAAGCAGG TTTTCCCACA AGACTTGGGA TGATAATATA TGCTGTTCTT 
    CAGGTGGTAA TCACTGCGCT TAATGCACCG ATAGTTGACA GAGCCGGAAG 
    AAAACCATTG CTACTGGTTT CTGCAACAGG GTTAGTGATA GGCTGTTTGA 
    TAGCAGCGGT TTCTTTCTAT CTCAAGGTTC ACGACATGGC GCACGAAGCA 
    GTCCCAGTCC TGGCTGTTGT TGGTATAATG GTGTACATAG GATCGTTTTC 
    AGCAGGAATG GGAGCAATGC CGTGGGTGGT CATGTCTGAG ATATTTCCCA 
    TAAACATAAA AGGAGTAGCA GGAGGCATGG CGACGCTGGT GAACTGGTTT 
    GGAGCGTGGG CTGTTTCTTA CACTTTCAAC TTCCTCATGT CCTGGAGCTC 
    TTACGGAACT TTCCTCATTT ACGCTGCCAT CAACGCGCTG GCCATTGTCT 
    TCGTCATTGC CATCGTGCCT GAGACAAAAG GGAAGACATT GGAGCAGATC 
    CAAGCTATAG TCAATCCATA GCTCAAACAC TTCCTAGATG TTCGTTTCTA 
    TTAGCCAGCT GGGACATAAA TTGCAATCTT GGATCTCTTT GCTTTTATGA 
    TTCTTTACTG AGTTCAATTG TTATCACTCT CTCTATTTCT AATCTCTTCT 
    TAATGAACTT TGGACTTCAA TTTGATGTTT TTCCAT

    Gene models with high sequence identity

    1. AT2G48020.2 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Sugar transporter, conserved site 0
    superfamily Major facilitator superfamily, general substrate transporter 6.6e-66
    HMMPfam General substrate transporter 3.4e-89
    FPrintScan Sugar/inositol transporter 1.6e-15
    FPrintScan Sugar/inositol transporter 1.6e-15
    FPrintScan Sugar/inositol transporter 1.6e-15
    FPrintScan Sugar/inositol transporter 1.6e-15
    HMMPanther SUGAR TRANSPORTER PLANT 5.2e-171
    HMMPanther SUGAR TRANSPORTER 5.2e-171
    HMMTigr Sugar/inositol transporter 6.4e-74
    Coil coiled-coil 0
    ProfileScan MFS 44.471

    See the detailed result >

    AT2G48020.2

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, chloroplast, vacuole, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G18840.1); Has 32576 Blast hits to 32035 proteins in 2204 species: Archae - 531; Bacteria - 16009; Metazoa - 5272; Fungi - 6662; Plants - 2708; Viruses - 2; Other Eukaryotes - 1392 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR