F14248

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14248

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14248

Determination of introduced cDNA(s)

  • RAFL05-09-P15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-09-P15 - Resource: pda17040

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-09-P15 - full reading 
    GACACTCATC AAAGCTCACA AAAAGAGAAG AGAAGAGACG AGGATCAATC 
    ACCATTCTCA TGGCTTCAGC TTCTTTCTCT GCGGTTTCTT CGCTCTCGTA 
    TCAATTCCGT TCAAAAGAAG CGATCTTTTC ATCGAAAGCT TCCTGTTTTA 
    GCTCGACGGC TTTATCAGGA AGGAGAGTGT TTGGATCTAT CAAAGCAGCT 
    CAAGTGACAA GCCATGAGAA TCCTAGAAGA CGAACTCAGA ACGTCGAAGG 
    AGATATATTT GTTGACAATA CTTGTATTGA TTGTGATACA TGTCGTTGGA 
    TGGTTCCGGA TTTATTCACT CGAGTGGACA ACATGTCTGC GGTTACAAAG 
    CAACCAACTT GTAAGGAGGA AAGACTGAAT GCTCTTCAGG CCTTACTATC 
    TTGTCCGACG GGCTCTATTC GCACTCAAAC TCCACCTGCT GACATAGGGG 
    AAGCTCAAGA GACCTTTCCA CTTGTAGTGG ACAAAGACAC ACTTCCTGGC 
    GTTTTTCATT GTGGATTTCA TTCCAAGAAA TCGTATGGAG CAACTTCTTA 
    CCTGATCCTT CATCGTGAGG GAAATATACT TGTTGATAGT CCTAGGTACG 
    TGGAGAAACT TGCTGGAAAG ATCGAGATGA AGGGTGGTGT TCGCTACATG 
    TTTTTGACAC ACAGGGATGA TGTTGCAGAT CACAAGAAAT GGGCAGACAG 
    ATTCAAGTCT ACCAGAATTC TGCATTCTGA TGATGTTGAA CCTTCGACCT 
    CTGATGTGGA GTTAAAGCTG GAAGGAAGTG GACCATGGAG TATCTATGAA 
    GATGTCGAAC TTATACACAC TCCTGGTCAT TCAGAAGGAT CAGTGTGCAT 
    GTTCCATAAG TCCCTCAAGG CATTATTCAC TGGCGACCAT GTAATAATGA 
    CCGAATCTGG ATTGAGCATT TTAGAGCAGT ACAATCACGG TTCAGTGCCT 
    CTCCAGCTCG AGAACGTAGA AAAATTGATC AACCTGGATT TCAATTGGCT 
    AATACCGGGA CATGGAAGAA GAGTACATTT CAAAGATGGA GACGAGAAGG 
    CGAAGAATCT GGAAGCACTT GTTCAGAAGC ACAGAGAGAA ACAACTTGTT 
    TCCTTTAGCA AATCCGGGAA AGCTTAAGAT ATGTATGCTG ATTCTAAACC 
    GGTTAATCAA ACTAAACCAG ACCGAATGTC TCTACGGCCT GACTGGTCTA 
    TGTGTCAGTT AGTTCCCACG CGAGTGATGT ATTTATTTCT ACGTAACATT 
    GTGAACCTGC TTAAACGCTT ACTAGATTGA AACGAAGACC GTGAGTAATA 
    AAGTCTCCTC TTTCCCAAAA AAAAAA

    Gene models with high sequence identity

    1. AT4G33540.1 [+] show detail - metallo-beta-lactamase family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Beta-lactamase-like 8.1e-15
    HMMPfam Lactamase_B 3.8e-11
    HMMPanther BETA LACTAMASE DOMAIN 2.4e-12
    HMMPanther BETA LACTAMASE DOMAIN 2.4e-12
    Gene3D no description 0.00097
    Gene3D no description 3.2e-14
    superfamily Metallo-hydrolase/oxidoreductase 2.5e-21
    superfamily 4Fe-4S ferredoxins 2.2e-06
    Coil coiled-coil 0

    See the detailed result >

    AT4G33540.1

    Model type
    Protein coding
    Short Description
    metallo-beta-lactamase family protein
    Computational Description
    metallo-beta-lactamase family protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: response to arsenic, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-lactamase-like (InterPro:IPR001279); Has 1592 Blast hits to 1592 proteins in 436 species: Archae - 145; Bacteria - 835; Metazoa - 30; Fungi - 10; Plants - 78; Viruses - 0; Other Eukaryotes - 494 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR