F14611

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14611

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F14611

Determination of introduced cDNA(s)

  • RAFL09-38-G24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-38-G24 - Resource: pda08283

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-38-G24 - full reading 
    AAAGAAAAAA AAAAGAAAGC TTTTTGGGAA CATAAACACC ATCGAAGGAG 
    GGTGGGAGGT GTTTTATGTT CATGGGTGGA GCTTCTTGGC CAACCTGACC 
    CCATTCATCA TATCATTACC CACTTTCTTC TCCTAAATTA TTCTCTCTTA 
    TCTCTCTCTC TCTCTTTTTA TTTTCTTTCT TTCTTAATTC ATCTAAACTC 
    TCTCTGCTTT TGCTTTTCGT AATTCCTTAC ATTTCACTCA ATATTAATCC 
    CCAGAATCTC CGATCCACCC ACAAATTTAG CAATTTTCTG AGATTTGATC 
    ATTTGGGTCA CCAAAAAATC TTGTCTTTTT GATCTGGGTT TAACGCCAAT 
    AACATATGGG AAACATTAGC AGCAGCGGTG GTGAAGGTAG ACGCCGTCGA 
    CGGCGAAACC ATACGGCGGC TCCACCACCA CCTCCTCCTC CTCCTTCTTC 
    TTCTCTTCCT CCACCACCTC TACCTACAGA AATCCAAGCT AATCCCATCG 
    TTTTCGCTGC CGTTACTCCC TATCCTAATC CTAATCCTAA TCCGGTTTAC 
    CAGTACCCTG CTTCTTACTA CCACCATCCT CCCCCGGGAG CCATGCCTCT 
    TCCGCCGTAC GACCACCACC TCCAACATCA TCCACCGCAT CCTTACCACA 
    ACCACTCTTG GGCTCCCGTG GCGATGGCCA GATACCCTTA TGCTGGTCAC 
    ATGATGGCTC AACCGACTCC TTACGTTGAA CACCAGAAAG CCGTCACGAT 
    TCGTAACGAC GTTAATCTCA AGAAGGAGTC TCTTAGGCTT GAACCCGACC 
    CGGATAATCC GGGTCGCTTT CTCGTCTCCT TTACGTTTGA TGCAACCGTC 
    TCCGGAAGGA TTAGTGTCAT TTTCTTTGCT AAAGAATCCG AAGATTGCAA 
    ACTCACAGCG ACAAAGGAAG ATATACTGCC ACCTATCACT CTAGATTTCG 
    AGAAAGGACT TGGTCAGAAG TTTAAACAAT CATCTGGTTC TGGTATAGAC 
    TTTTCGGTCT TTGAGGACGT TGAGCTGTTC AAAGCGGCCG CAGACACAGA 
    GATCTATCCA TTAGCGGTTA AGGCAGAAGC AGCTCCCTCA GGTGGTGAGA 
    ATGAAGAAGA AGAAAGGTCG GGGTCGAAGA ATGCGCAGAT TACTCAAGCG 
    GTTTATGAGA AGGATAAAGG AGAGATTAAG ATTAGAGTGG TGAAGCAGAT 
    ACTATGGGTT AATGGAACGA GATATGAGTT GCAGGAGATT TATGGGATTG 
    GGAATACAGT TGAGGGGGAT GATGATTCAG CTGATGATGC TAATGATCCT 
    GGTAAAGAAT GTGTTATATG TTTGTCTGAA CCACGAGACA CCACTGTTCT 
    TCCATGTCGA CATATGTGTA TGTGTAGCGG ATGTGCTAAG GTATTGAGGT 
    TTCAGACAAA TCGATGCCCC ATTTGCAGGC AACCTGTTGA AAGGCTTTTG 
    GAGATAAAAG TTCACGGTAA CAACGGAAGC GGGAATAACA CCGGACAGGG 
    AGAAACAGTT GAACAAGAGT AGCTAAACAC GGCCGAGTAT GGATTGAAAT 
    GCCATCGAAA TATTAGTAGT ATATGCATGT TTGATCCTTG TATGTTAACA 
    ACAAAATGTG TGATTGTCAA TTCATAATAT AGAGATTACC AAAAAAAAAA 
    AAAAAAA

    Gene models with high sequence identity

    1. AT3G09770.1 [+] show detail - RING/U-box superfamily protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther MAHOGUNIN 1.1e-138
    ProfileScan Zinc finger, RING-type 11.162
    superfamily RING/U-box 1.6e-14
    HMMSmart Zinc finger, RING-type 0.00026
    Gene3D no description 3e-05

    See the detailed result >

    AT3G09770.1

    Model type
    Protein coding
    Short Description
    RING/U-box superfamily protein
    Computational Description
    RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G03200.1); Has 9681 Blast hits to 6810 proteins in 512 species: Archae - 8; Bacteria - 442; Metazoa - 3215; Fungi - 970; Plants - 3369; Viruses - 475; Other Eukaryotes - 1202 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR