F14644

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14644

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14644

Determination of introduced cDNA(s)

  • RAFL07-10-D16 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-10-D16 - Resource: pda04068

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-10-D16 - full reading 
    GCTCGTGTCG AGGCGGCAGC AACACACTTG TCGTCTCTCC CTGTAGCTTC 
    TCTGGAGTTT TCGCAGTCAC GAATCTTGTT TTGAAGAAAT TAATTTGAAC 
    AAGGGTTTTA GGGCTTGGAT GCTTTGTTTT CATTGAAAAA GAAGTAGAAG 
    GAGTGTATAC AAGGATTATG GGAACTCACA TCAATTTCAA CAACTTAGGA 
    GGTGGTGGTC ATCCTGGAGG GGAAGGGAGT AGTAACCAGA TGAAGCCAAC 
    GGGTAGTGTC ATGCCCTTGG CTAGGCAGTC CTCGGTCTAC TCCCTTACCT 
    TTGATGAGTT ACAGAACACA CTAGGTGGAC CGGGAAAAGA TTTCGGGTCG 
    ATGAACATGG ATGAACTCCT GAAGAGCATA TGGACTGCTG AGGAAGCTCA 
    GGCCATGGCC ATGACTTCTG CGCCAGCTGC TACAGCGGTA GCGCAACCTG 
    GTGCTGGTAT CCCACCCCCA GGTGGGAATC TCCAGAGGCA AGGTTCGTTG 
    ACGTTGCCTA GAACAATTAG TCAGAAGACT GTTGATGAGG TGTGGAAATG 
    TTTGATCACC AAGGATGGTA ATATGGAAGG TAGCAGCGGA GGCGGTGGTG 
    AGTCGAATGT GCCTCCTGGA AGGCAACAGA CTTTAGGGGA AATGACACTT 
    GAAGAATTTC TGTTCCGTGC TGGGGTTGTA AGAGAAGATA ACTGTGTTCA 
    ACAGATGGGT CAGGTCAACG GAAACAATAA CAATGGGTTT TATGGTAACA 
    GCACTGCTGC TGGCGGCTTA GGTTTTGGAT TTGGTCAGCC AAATCAAAAC 
    AGCATAACAT TCAATGGTAC TAATGATTCT ATGATCTTGA ATCAGCCACC 
    TGGTTTAGGG CTCAAAATGG GTGGAACAAT GCAGCAGCAA CAACAACAAC 
    AGCAGTTGCT TCAGCAGCAA CAACAGCAGA TGCAGCAGCT GAATCAGCCT 
    CATCCACAGC AGCGGCTGCC TCAAACCATT TTTCCTAAAC AAGCAAACGT 
    AGCATTTTCT GCGCCTGTGA ATATAACCAA CAAGGGTTTT GCTGGGGCTG 
    CAAATAATTC TATCAACAAT AATAATGGAT TAGCTAGTTA CGGAGGAACC 
    GGGGTCACTG TTGCAGCAAC TTCTCCAGGA ACAAGCAGCG CAGAAAATAA 
    TTCTTTATCA CCAGTTCCGT ATGTGCTTAA TCGAGGACGA AGAAGCAATA 
    CAGGTCTAGA GAAGGTTATC GAGAGGAGGC AAAGGAGAAT GATCAAGAAT 
    CGGGAATCAG CTGCTAGATC AAGAGCTCGA AAGCAGGCTT ATACATTGGA 
    ACTGGAAGCC GAAATTGAAA AGCTCAAGAA AACGAATCAA GAACTGCAGA 
    AAAAACAGGC TGAAATGGTG GAAATGCAGA AGAATGAGCT GAAAGAAACG 
    TCGAAGCGAC CGTGGGGCAG CAAAAGGCAA TGCTTGAGAA GGACATTAAC 
    CGGACCATGG TGAAGGATGA AGCAACAAGA ACGGATGAAC CAGACTCCTA 
    GCTTGGGATT AATGTAATAG GATAGTGCTA CCTGTACAGG AGATTAAGAG 
    AAATTGAGTG AAAGATCTAG GTTACAGAGT AGGAGAGAGT TTTCATTATG 
    AATAAATGAC ATTTTGTGCC CTGACCTTTG TTAGTTTAGG TTTAGATTAT 
    CCTCTGTTAT TGACTTATTG TGCTTTCTGG TTGTTAGGGT TTCTAAAAGA 
    CATAGTTGTT TATATATATG TCTGACTTTG TATTAAGAAA AAAAAAAAAA 
    AAA

    Gene models with high sequence identity

    1. AT3G19290.1 [+] show detail - ABRE binding factor 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam bZIP transcription factor, bZIP-1 5.1e-11
    HMMSmart Basic-leucine zipper (bZIP) transcription factor 7.5e-11
    HMMPanther CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF 1.6e-08
    HMMPanther CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 1.6e-08
    ProfileScan Basic-leucine zipper (bZIP) transcription factor 10.726
    Coil coiled-coil 0
    Coil coiled-coil 0
    PatternScan Basic-leucine zipper (bZIP) transcription factor 0

    See the detailed result >

    AT3G19290.1

    Model type
    Protein coding
    Short Description
    ABRE binding factor 4
    Curator Summary
    bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses.
    Computational Description
    ABRE binding factor 4 (ABF4); FUNCTIONS IN: protein binding, DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 6 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616); BEST Arabidopsis thaliana protein match is: abscisic acid responsive element-binding factor 1 (TAIR:AT1G49720.1); Has 5268 Blast hits to 4676 proteins in 263 species: Archae - 0; Bacteria - 14; Metazoa - 1616; Fungi - 400; Plants - 1635; Viruses - 0; Other Eukaryotes - 1603 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR