F14719

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14719

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F14719

Determination of introduced cDNA(s)

  • RAFL05-17-D15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-17-D15 - Resource: pda07378

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-17-D15 - full reading 
    GGATTACTCA CCTACTCGAG AGTGGTTTAG CTTTTTTGTA CCGTACATCT 
    TCTTCCCAGA AACATGGCTG AGGCTTCTGA TTTGTTGGAA TGGCCTAAGA 
    AGGATAACCG TCGTTTTCTC CATGTTGTCT ACCGCGTTGG TGATCTTGAT 
    CGCACCATTG AGTTTTACAC TGAGGTCTTT GGTATGAAGC TGTTGAGGAA 
    AAGAGATATC CCTGAGGAGA AGTATTCTAA TGCTTTTCTT GGTTTTGGAC 
    CTGAAACATC TAACTTTGTT GTGGAGCTCA CATATAACTA TGGTGTTAGC 
    TCATATGATA TTGGAACTGG CTTTGGGCAT TTTGCCATTT CAACTCAAGA 
    TGTTTCCAAA CTGGTTGAGA ACGTCCGTGC CAAGGGTGGA AATGTGACTA 
    GGGAACCTGG TCCAGTCAAA GGTGGAGGCA GTGTCATTGC GTTTGTGAAG 
    GACCCTGATG GCTACACTTT TGAGCTCATC CAGAGAGGTC CAACTCCTGA 
    ACCTTTCTGC CAAGTCATGC TTCGTGTTGG TGATCTCGAC CGTGCCATCA 
    AATTCTATGA AAAGGCCCTC GGGATGAGAC TCTTGAGAAA GATTGAGAGA 
    CCTGAGTACA AGTACACCAT AGGCATGATG GGGTATGCTG AAGAATACGA 
    GTCGATAGTT TTGGAGCTGA CCTATAACTA CGACGTGACT GAGTACACAA 
    AGGGCAATGC ATATGCACAG ATTGCAATAG GCACAGATGA TGTGTACAAA 
    AGCGGTGAAG TTATTAAGAT AGTCAACCAA GAGCTAGGAG GAAAGATCAC 
    TAGAGAAGCC GGACCTCTTC CTGGACTCGG CACCAAGATT GTCTCATTCC 
    TTGATCCAGA TGGCTGGAAA ACGGTTTTGG TGGACAACAA AGATTTTCTC 
    AAGGAACTGG AATGAGAAGA GCGATGAATG AAGGTCGAGA TCACAAAACC 
    ATAATAATAA AAATGTGATC ATAAAATAAA AGGAAGACTT AGAGTTTGAT 
    CTAAAATAAG AAGATGTGGT TTAGTTTGTG TCGTGCTATG TGTGTGTGCT 
    CGTTTCTTTT GTCTTTGAGC TTAAAAGTTA AAACTCTAGT CTATATGGAC 
    CTGAATAAAA ATATTTCCAC C

    Gene models with high sequence identity

    1. AT1G11840.2 [+] show detail - glyoxalase I homolog
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Glyoxalase I, conserved site 0
    PatternScan Glyoxalase I, conserved site 0
    PatternScan Glyoxalase I, conserved site 0
    HMMPanther LACTOYLGLUTATHIONE LYASE (GLYOXALASE I) 6.9e-91
    HMMTigr Glyoxalase I 1.4e-96
    HMMTigr Glyoxalase I 9.8e-39
    superfamily Glyoxalase/Bleomycin resistance protein/Dihyd 6e-44
    Gene3D no description 1.8e-42
    Gene3D no description 2.6e-33
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 9.6e-24
    HMMPfam Glyoxalase/bleomycin resistance protein/dioxygenase 2.9e-11

    See the detailed result >

    AT1G11840.2

    Model type
    Protein coding
    Short Description
    glyoxalase I homolog
    Curator Summary
    Encodes a glyoxalase I homolog ATGLX1.
    Computational Description
    glyoxalase I homolog (GLX1); FUNCTIONS IN: lactoylglutathione lyase activity, metal ion binding; INVOLVED IN: response to cadmium ion, carbohydrate metabolic process; LOCATED IN: peroxisome, plasma membrane, vacuole, chloroplast envelope; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Glyoxalase I (InterPro:IPR004361), Glyoxalase I, conserved site (InterPro:IPR018146), Glyoxalase/bleomycin resistance protein/dioxygenase (InterPro:IPR004360); BEST Arabidopsis thaliana protein match is: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (TAIR:AT1G67280.1); Has 8678 Blast hits to 5178 proteins in 1682 species: Archae - 141; Bacteria - 5669; Metazoa - 503; Fungi - 263; Plants - 249; Viruses - 0; Other Eukaryotes - 1853 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR