F14722

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F14722

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: F14722

Determination of introduced cDNA(s)

  • RAFL16-37-J01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL16-37-J01 - Resource: pda19700

    full reading [+] show sequence

    Nucleotide sequence: RAFL16-37-J01 - full reading 
    CTCGATCAAT TATCCATTTT GCCCAGATTT TTTCCAGAAG CTCATCGAAT 
    TCATTATAAG AGTTATGGAG AATGGTGGTC AGTATGATAA TGCGCGGTTC 
    AAGCCCGATT ACTTCAAAGG TGCACAATCT ATGTGGAATA TGATTCCCCA 
    GCATCAGATT AAGGAACAAC ATAATGCGTT GGTGATGAAT AAGAAGATCA 
    TGTCCATCCT TGCTGAGAGA GACGCTGCTG TACATGAAAG AAATCAAGCT 
    GTCTCTGCTA AAAAGGAAGC TGTCGCTGCT CGGGACGAAG CGCTTCAGCA 
    ACGTGACAAA GCTCTTTCTG AGAGAGATAA AGCTTTGATA GAGAGAGATA 
    ATGCTTATGC TGCTCTTCAA CACCATGAAA ATAGTCTCAA CTTTGCTTTG 
    TCTGGTGGGA AGTGTGTTGA TGGAGATGAT TGTTTTGGTA TTGGGGAACC 
    CCACAAACTT GAAGTCTTCC CTTTGTCAAC TATTCCGCCT GAGGTTACAA 
    ACACGAAGGT GGTGAACAAA AGGAAGAAAG AGAACAAGCA GGGACTATCA 
    AAGGTGAAAA AAGTGGGTGA AGATCTGAAC CGTCGAGTTC CTGCTCCTGG 
    AAAGAAATCT AGAACAGATT GGGACAGTCA AGATGTCGGT TTGAACTTAG 
    TCACCTTCGA TGAGACGACA ATGCCTGTAC CCATGTGTTC GTGCACAGGC 
    TCTACGCGTC AGTGTTACAA ATGGGGAAAT GGCGGCTGGC AATCGTCTTG 
    CTGCACAACC ACCTTATCCC AGTATCCATT ACCGCAGATG CCAAACAAGA 
    GGCATTCTCG GATGGGCGGT AGGAAAATGA GCGGAAACGT TTTCTCGAGA 
    TTACTCAGCC GTTTATCAGC AGAAGGATAT GATCTCTCGT GTCCTGTTGA 
    TCTTAAAGAC TATTGGGCTA GGCACGGGAC AAACCGCTAC ATCACTATCA 
    AGTAGCCTCT GTTGTTTACA CAGTCCAAGT ATGTTTCTCT CGTCTTCTTA 
    AGATTAGGTG TTGTCTTTGT CTTTATTGTC CATAGTTTGT TCTTTGTTGT 
    GTATGGTAAA ACCATTGTTA TGTGTATCTT TTGGATGGGC AAAAATGGTT 
    TGCATAAAAA ATCTGTGTTT TGACCTCAAA AAATAAAATA AAATCGTAAC 
    AGTTAAA

    Gene models with high sequence identity

    1. AT2G21240.2 [+] show detail - basic pentacysteine 4
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam GAGA binding-like 4.7e-108
    Coil coiled-coil 0

    See the detailed result >

    AT2G21240.2

    Model type
    Protein coding
    Short Description
    basic pentacysteine 4
    Computational Description
    basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR