F15107

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15107

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15107

Determination of introduced cDNA(s)

  • RAFL06-09-F15 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F15 - Resource: pda02935

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-F15 - full reading 
    ACGAGAGAGA GAGAAAGTAT CTAAAATTAA GCTTTGTGTT TGAAATCGAA 
    ATCGAATCGA GAAGAAGAGA ATCTCAATGG AAGCTGATGA CGATTTCTAC 
    AGCGGCACCG AAAACTACTC CGATTACGCC GACTCCGACG AAGATGACGC 
    CGACGGCGAG TACGAGTTCG TTGACGACGC TGCTGATGAT TCCGATGACC 
    TTATCTTCCG TCGCCGCCAG CAAAATTATA GTGTGTTAAG CGAAGCAGAT 
    ATTTGTAAGC TTCAAGAAGA TGATATTTCA AGGATTTCTA CTGTTTTGTC 
    CATTTCGAGG AATTCATCTG CGATCCTGCT TCGTCACTAC AATTGGTGTG 
    TGAGCAGAGT TCATGATGAA TGGTTTGCTG ATGAGGAAAA GGTTCGAGAT 
    GCTGTTGGTT TATTAGAGAA ACCTGTTGTT GATTTCCCAA CTGATGGAGA 
    ACTTGATTGT GGAATTTGTT TTGAGACTTT CCTTTCTGAC AAATTGCATG 
    CTGCTGCTTG TGGTCATCCA TTCTGCGACT CATGTTGGGA AGGTTATATC 
    ACCACAGCGA TTAATGATGG TCCAGGGTGT CTTACATTAC GATGTCCAGA 
    TCCTTCTTGC AGAGCTGCTG TTGGTCAGGA TATGATCAAT TTGCTAGCTC 
    CTGATAAAGA TAAGCAAAAG TACACTAGTT ATTTTGTCAG ATCATACGTT 
    GAAGACAATA GAAAGACCAA GTGGTGTCCC GCTCCTGGCT GTGACTATGC 
    TGTAAATTTT GTTGTTGGAA GTGGTAATTA TGATGTGAAT TGTCGCTGCT 
    GTTACAGTTT CTGCTGGAAT TGTGCTGAAG AAGCTCACCG TCCTGTAGAT 
    TGTGACACTG TTTCTAAGTG GGTATTGAAG AATAGTGCTG AGTCGGAGAA 
    TATGAATTGG ATTTTGGCAA ATTCCAAGCC CTGTCCAAAA TGCAAACGGC 
    CAATAGAGAA AAACCAGGGT TGTATGCATA TTACGTGCAC CCCACCATGT 
    AAATTTGAGT TCTGCTGGCT TTGCCTTGGG GCGTGGACAG AGCATGGTGA 
    GAAGACAGGT GGCTTTTATG CTTGTAACCG TTATGAAGCA GCAAAGCAAG 
    ATGGCATTTA TGATGAGACT GAAAAACGCC GAGAGATGGC AAAGAACTCT 
    CTTGAGAGAT ATACCCACTA CTATGAGAGA TGGGCAACCA ATCAATCGTC 
    TAGGCAAAAG GCGCTGCTGG ATCTTAAGAA GATGCAAACA GATGATATTG 
    AGAAGCTCAG TGACATACAG TGTCAGCCTG AATCACAACT GAAGTTCATT 
    ATAGAAGCAT GGTTACAGAT AGTTGAATGC AGACGAGTTC TAAAATGGAC 
    ATATGCCTAT GGTTTTTACA TACCTGACCA GGAGCATGGA AAAAGAGTGT 
    TTTTTGAGTA CTTGCAAGGC GAAGCTGAGT CGGGCCTTGA ACGACTTCAT 
    CAATGTGCTG AAAAAGAGCT GCTACCATAC TTAGATGCCA AAGGTCCAAG 
    TGAAGATTTT AATGAATTCC GCACAAAACT GGCAGGTTTA ACAAGTGTTA 
    CCAAAAACTA TTTTGAGAAC TTGGTTAGAG CGCTGGAGAA TGGGCTATCG 
    GATGTGAACT CGCATGATGC ATATGATCGA ACTTCAAGTT CAAAGAGCTT 
    AGGGGGGAAG ACTAAGGGAT CGAGTTCTAA AGCCAGCAGC TCCGATTCAA 
    GCCATTGGCC TTGTGAATAT TGCACTTACG TAAATCCAAG GTCGACCACC 
    ATTTGCCAAA TGTGTGAACA TGGCCGGTGA AATGCCAGAA ACTGGCATTA 
    AAGACTGTAA TAGTAATGCT TCGTCGCTTT TGGTCATAAT TATGATCAAG 
    TGTCGTGTAA CTTTGTATGT TTCTCGTATT AGAATAAACG GGTCCAATAA 
    ATTGGATTAG ATTGGCCATT ATTATTGATT TGCCAATGAC CAAAAAGTGA 
    AAACATGAGA GGTGAGTTAT ATATAAGTTC TTACAAAATA ATTGTAAAAC 
    TTCTGTAAGT TTT

    Gene models with high sequence identity

    1. AT1G65430.1 [+] show detail - IBR domain-containing protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ARI-LIKE RING ZINC FINGER PROTEIN-RELATED 1.1e-301
    HMMPanther ARIADNE RING ZINC FINGER 1.1e-301
    ProfileScan Zinc finger, RING-type 9.465
    ProfileScan Zinc finger, RanBP2-type 8.05
    HMMPfam Zinc finger, C6HC-type 1.7e-13
    HMMPfam Zinc finger, C6HC-type 3.8e-10
    PatternScan Zinc finger, RanBP2-type 0
    HMMSmart Zinc finger, C6HC-type 1.5e-22
    HMMSmart Zinc finger, C6HC-type 0.09
    HMMSmart Zinc finger, RanBP2-type 8.9e-06
    superfamily RING/U-box 2.6e-16
    superfamily RING/U-box 4e-10
    superfamily NZF domain 8.8e-06

    See the detailed result >

    AT1G65430.1

    Model type
    Protein coding
    Short Description
    IBR domain-containing protein
    Computational Description
    ARIADNE 8 (ARI8); FUNCTIONS IN: ubiquitin-protein ligase activity; LOCATED IN: intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, CCHC-type (InterPro:IPR001878), Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: IBR domain-containing protein (TAIR:AT2G31510.1); Has 2973 Blast hits to 2950 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 1311; Fungi - 559; Plants - 644; Viruses - 3; Other Eukaryotes - 456 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR