F15123

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15123

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15123

Determination of introduced cDNA(s)

  • RAFL05-07-D07 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-07-D07 - Resource: pda02466

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-07-D07 - full reading 
    GTTCATCAGA TCTACTACAA TCTCTCTTTT TCTTCGGGTA TGGAGGGCCA 
    ACGAGGCAGT AATTCTTCGT TGAGCTCTGG CAATGGTACC GAAGTCGCCA 
    CCGACGTTTC TTCTTGCTTC TATGTTCCCA ATCCCTCTGG AACCGATTTC 
    GATGCCGAGT CGTCTTCTCT TCCTCCTCTC TCCCCAGCTC CTCAAGTGGC 
    ATTGTCAATT CCTGCGGAGC TTGCCGCCGC CATTCCCCTC ATCGATCGCT 
    TCCAGGTTGA AGCTTTTCTG CGGCTAATGC AGAAACAAAT CCAGTCTGCT 
    GGGAAGCGTG GCTTCTTCTA TTCCAAAAAG TCCTCTGGCT CCAATGTCCG 
    CGAGCGCTTC ACATTTGAGG ATATGCTTTG CTTTCAAAAG GATCCAATCC 
    CCACATCTCT CCTCAAGATT AACAGCGATC TCGTCAGCCG TGCTACCAAG 
    TTGTTTCATC TCATCTTAAA ATATATGGGT GTTGATTCAT CTGATCGATC 
    TACGCCTCCC AGTTTAGATG AACGCATTGA CCTCGTTGGA AAGCTCTTCA 
    AAAAAACTTT GAAGCGTGTT GAACTCAGGG ACGAACTTTT TGCCCAAATC 
    TCCAAACAGA CTAGACATAA TCCTGACAGG CAATACTTGA TCAAAGCTTG 
    GGAATTGATG TACTTATGTG CCTCCTCTAT GCCTCCTAGC AAAGATATCG 
    GTGGATATCT ATCTGAGTAT ATTCATAATG TCGCACACGA TGCAACTATT 
    GAACCGGATG CTCAGGTTCT TGCTGTTAAC ACTTTGAAAG CTTTAAAGCG 
    CTCTATCAAA GCTGGTCCTA GGCACACCAC ACCTGGTCGT GAAGAAATTG 
    AAGCCCTTTT GACCGGTAGA AAGCTCACAA CCATTGTCTT CTTTCTCGAT 
    GAAACTTTTG AAGAAATTTC ATATGACATG GCTACCACAG TGTCTGATGC 
    TGTTGAGGAG CTAGCTGGAA CAATTAAACT ATCAGCTTTC TCTAGCTTTA 
    GTTTGTTTGA ATGTCGTAAA GTTGTTTCAA GTTCTAAATC ATCTGATCCC 
    GGAAATGAGG AATATATAGG ATTGGATGAT AACAAGTATA TTGGAGATCT 
    CCTCGCAGAA TTTAAAGCTA TTAAAGATCG AAATAAAGGA GAGATACTAC 
    ACTGCAAACT GGTATTTAAA AAAAAATTAT TCCGAGAGTC TGATGAAGCT 
    GTAACAGATC TGATGTTTGT GCAACTTTCG TATGTTCAAC TGCAACATGA 
    CTATTTGCTA GGAAACTATC CTGTTGGGAG GGACGATGCT GCACAGCTTT 
    GTGCCTTGCA AATTCTTGTT GGGATTGGGT TTGTCAATAG TCCAGAGTCA 
    TGCATTGATT GGACATCACT TCTTGAGCGG TTTTTGCCAA GACAAATAGC 
    AATAACCCGA GCAAAGCGTG AATGGGAATT GGATATCCTT GCTCGCTACC 
    GTTCAATGGA GAACGTGACC AAAGATGATG CAAGACAACA ATTTCTACGG 
    ATACTGAAGG CACTGCCATA CGGGAATTCA GTTTTTTTTA GCGTACGCAA 
    GATAGATGAT CCGATCGGTC TTTTACCTGG GCGAATCATT TTGGGTATCA 
    ACAAACGTGG GGTTCACTTT TTTCGACCGG TTCCTAAAGA ATATCTGCAC 
    TCTGCTGAAC TACGTGACAT CATGCAATTT GGCAGCAGTA ACACTGCTGT 
    CTTTTTCAAA ATGAGAGTCG CTGGTGTTCT TCACATATTT CAGTTCGAGA 
    CAAAACAGGG AGAAGAAATT TGTGTTGCTT TGCAAACACA TATAAATGAT 
    GACATGTTGC GTCGTTACTC CAAAGCTCGA TCTGCTGCCA ATAGCTTGGT 
    TAATGGAGAT ATATCTTGTA GTTCTAAGCC GCAAAATTTT GAAGTGTATG 
    AAAAACGTTT GCAAGATTTG TCTAAGGCTT ATGAAGAGTC CCAAAAGAAG 
    ATTGAGAAGT TGATGGATGA ACAACAAGAG AAAAATCAGC AAGAAGTTAC 
    TCTGCGTGAA GAGTTAGAAG CTATACACAA TGGTTTGGAG CTTGAAAGGA 
    GAAAATTGTT GGAGGTTACT TTAGACCGAG ATAAACTTAG GTCATTGTGT 
    GACGAGAAGG GAACAACTAT TCAATCCTTG ATGTCTGAAC TGCGAGGAAT 
    GGAAGCAAGG TTGGCAAAGT CGGGCAACAC AAAATCAAGT AAAGAGACAA 
    AATCAGAATT AGCCGAAATG AATAATCAGA TATTATACAA GATCCAAAAG 
    GAGTTAGAAG TTCGAAATAA GGAATTGCAT GTCGCAGTTG ATAATTCAAA 
    GAGGTTGTTG AGTGAAAACA AGATATTGGA GCAAAATCTC AATATTGAAA 
    AGAAGAAAAA AGAGGAGGTT GAAATTCATC AAAAGAGATA TGAACAAGAA 
    AAAAAGGTGT TAAAGCTTCG AGTTTCTGAA CTTGAAAATA AGCTTGAAGT 
    ACTTGCTCAA GACTTGGATA GTGCTGAGTC TACGATTGAA AGTAAGAATT 
    CTGACATGCT GCTGTTGCAA AATAACTTGA AAGAACTTGA GGAGTTAAGA 
    GAAATGAAAG AGGACATTGA CAGAAAAAAT GAGCAAACAG CTGCCATTTT 
    GAAAATGCAA GGAGCCCAAC TTGCTGAGCT AGAAATACTT TATAAGGAAG 
    AACAAGTTTT AAGGAAAAGA TACTATAATA CCATAGAAGA TATGAAAGGG 
    AAGATTAGAG TTTATTGTCG AATAAGACCT CTAAATGAAA AAGAGAGTTC 
    AGAGAGGGAA AAACAAATGC TGACAACTGT GGATGAGTTT ACTGTTGAAC 
    ATCCATGGAA AGACGACAAA AGAAAGCAAC ACATATATGA TCGCGTATTT 
    GACATGCGTG CTAGTCAAGA TGATATCTTT GAAGACACAA AGTATTTGGT 
    ACAGTCGGCT GTAGATGGGT ATAACGTTTG CATCTTTGCA TATGGTCAAA 
    CTGGTTCTGG AAAAACTTTC ACTATATATG GGCATGAGAG CAATCCTGGA 
    CTCACACCTC GAGCTACAAA GGAACTGTTC AACATATTAA AGCGAGATAG 
    CAAGAGATTT TCATTTTCTC TAAAGGCATA TATGGTGGAA CTTTATCAAG 
    ACACACTTGT AGACCTTTTG TTACCAAAAA GTGCAAGACG CTTGAAACTA 
    GAGATTAAAA AAGATTCAAA GGGAATGGTC TTTGTAGAGA ATGTGACAAC 
    TATTCCTATA TCAACTTTGG AGGAACTGCG AATGATTCTT GAACGGGGAT 
    CGGAACGACG ACATGTTTCT GGAACAAATA TGAATGAAGA AAACTCAAGA 
    TCTCACCTCA TATTATCAGT TGTTATTGAA AGTATTGATC TTCAAACCCA 
    GTCTGCTGCG AGGGGCAAGC TGAGTTTTGT GGATCTTGCT GGTTCTGAGA 
    GAGTTAAAAA GTCGGGCTCA GCTGGTTGTC AACTCAAAGA AGCTCAAAGT 
    ATCAACAAAT CACTTTCTGC ATTAGGTGAT GTTATTGGTG CTTTATCTTC 
    TGGCAACCAG CATATTCCTT ATAGGAATCA CAAGCTAACG ATGTTGATGA 
    GCGATTCATT GGGCGGCAAT GCCAAGACGT TAATGTTTGT TAATGTGTCT 
    CCAGCCGAAT CAGATTTGGA CGAGACGTAC AATTCTCTTC TATATGCATC 
    GAGAGTGAGA ACGATCGTGA ATGATCCCAG CAAACATATA TCATCCAAAG 
    AGATGGTGCG ATTGAAGAAG TTGGTAGCAT ACTGGAAAGA GCAAGCCGGT 
    AAAAAAGGTG AGGAAGAAGA CTTGGTGGAT ATTGAGGAAG ATCGTACACG 
    AAAAGATGAG GCAGATAGTT GAAGAAAGCT GACATGAAAT TCGTCTAGGT 
    GAAATTGAGA CTATAGTATC ACTGGTTTTC ACCATTCTTT TTGTAGGAAG 
    TTCCTGCTTT ATAGTAGAGT TTCTATCGAA GAGTAGTCCT ATATGTCTCA 
    AACTTTCTCT CTTTTGATGA GATCTTCATT ACAAGAAATG AAAAAAAAAA 
    AAAAAATTCG TAAAAAAAAA AAAAAAA

    Gene models with high sequence identity

    1. AT5G65930.2 [+] show detail - kinesin-like calmodulin-binding protein (ZWICHEL)
      E-value: 0; Score: 99.90

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan FERM domain 34.923
    ProfileScan Kinesin, motor domain 51.459
    ProfileScan MyTH4 domain 51.607
    Gene3D FERM/acyl-CoA-binding protein, 3-helical bundle 1.2e-20
    Gene3D Kinesin, motor domain 4.4e-119
    HMMPfam Kinesin, motor domain 2.8e-103
    HMMPfam MyTH4 domain 3.7e-39
    HMMPfam FERM central domain 3.1e-11
    HMMPfam FERM, N-terminal 1.2e-08
    Coil coiled-coil 0
    Coil coiled-coil 0
    superfamily P-loop containing nucleoside triphosphate hyd 3.8e-117
    superfamily FERM central domain 2.5e-21
    superfamily Prismane-like 9e-09
    superfamily PH domain-like 1.9e-06
    PatternScan Kinesin, motor region, conserved site 0
    HMMPanther CALMODULIN BINDING PROTEIN 3.1e-284
    HMMPanther KINESIN HEAVY CHAIN 3.1e-284
    FPrintScan Kinesin, motor domain 2.1e-38
    FPrintScan Kinesin, motor domain 2.1e-38
    FPrintScan Kinesin, motor domain 2.1e-38
    FPrintScan Kinesin, motor domain 2.1e-38
    HMMSmart MyTH4 domain 1.1e-51
    HMMSmart Band 4.1 domain 7.6e-38
    HMMSmart Kinesin, motor domain 3e-162

    See the detailed result >

    AT5G65930.2

    Model type
    Protein coding
    Short Description
    kinesin-like calmodulin-binding protein (ZWICHEL)
    Curator Summary
    encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches.
    Computational Description
    ZWICHEL (ZWI); FUNCTIONS IN: microtubule motor activity, calmodulin binding; INVOLVED IN: trichome branching, pollen germination; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FERM central domain (InterPro:IPR019748), Prismane-like (InterPro:IPR011254), MyTH4 domain (InterPro:IPR000857), Kinesin, motor domain (InterPro:IPR001752), FERM, N-terminal (InterPro:IPR018979), Band 4.1 domain (InterPro:IPR019749), Kinesin, motor region, conserved site (InterPro:IPR019821), FERM/acyl-CoA-binding protein, 3-helical bundle (InterPro:IPR014352), FERM domain (InterPro:IPR000299); BEST Arabidopsis thaliana protein match is: Di-glucose binding protein with Kinesin motor domain (TAIR:AT2G22610.1); Has 92267 Blast hits to 53660 proteins in 2386 species: Archae - 1115; Bacteria - 10663; Metazoa - 44616; Fungi - 7060; Plants - 5081; Viruses - 192; Other Eukaryotes - 23540 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR