F15139

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15139

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15139

Determination of introduced cDNA(s)

  • RAFL07-18-J19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL07-18-J19 - Resource: pda07893

    full reading [+] show sequence

    Nucleotide sequence: RAFL07-18-J19 - full reading 
    AGCTCTTGGA TCCATGCAAA TAAAGCAGAT CTTAGAAGTC GCGCGGTTTT 
    CAGATATGTG CTACGCGAAT TCGAGGAACT TAGTGATCAA CGGAAGATCT 
    GCCTGCTGAC CTTCGCTGTC TTCCCTGAAA ATCAAGAGGT GAATAGAACG 
    ATGCTGATGT ATTGGTGGAT GGGGGAGGGC ATTCTGAGTA CTAAAGACAT 
    ATCATCACAA GAGGGCACTG AAGAGGTCAT TCTCAAACCC GAAGATGTTG 
    TGAAGGTCAT TCTTAAGGAT TTCACGGATA GAAACTTGAT TGAACCTGTT 
    GAAATCAAAC GCAAAGTCGA GCCAAGTAGC TATAAGATGG CCCCCTTTGT 
    GCATGCTTCA GTGGTTCTTA TCTCCAAGGA GATAGGGCTT TTTGATATGT 
    ATGATATAAA GGACAAGCCA GTCATGAAGA AATCAGGAAT GCACAAGGTA 
    TGCCTTGTGG AAGGGTCGTC AAGCCAGCAA GAAGCAAAAG CTAAAAAAAA 
    TGGAAGATGT AGATCATATT GAAACTGTGT TCAATGTTTC GGAGAGGTTT 
    CCGGATTTCA CATTCAAGTG GTTCTCGGAG GATAAACCAA CGCGAAATAA 
    GTTGACTCTG TCAAAAGTTA CGTATCAAAA GCTCAAGGTG TTCTATCTGG 
    GAAGATGGGA GAGAACTGCC AAGCGCCACA TCGAGGTGGA GAATCCTGAG 
    CTTATGAAAA ATTTGAAGCG TATGATTAAA CTCAAGCTTC TGAGTTTTCA 
    AGGGATCTCA AGAATTGAAC GACTTGACGA TGCTGTCTGC AAGCTTCGTG 
    ACCTGATCAT CTTGGACCTC AGAGCTTGCT ATAATCTGGA GAAACTTCCA 
    GACAAGATAG ATTCACTCAA GGCGCTTATC TACTTGGACA TTACAGATTG 
    CTACATGATA GATCGCATGC CCAAGAGGTT GTCATGGCTT GATAACTTAG 
    AGGTTCTCAA GGGCTTTGTT GTCAGTGATG CTACAGATGA AGAGACGGTC 
    TGCACACTGG CTGAGTTGGT GCACTTGAAG AAGCTGAGAA AGCTAAGTAT 
    TTCAATAAAC AAAGAAAATT TCAGCATAGA TGATGTGTTC GTGGCTGTAA 
    AGAGTTTCAA AAAACTGGAA AAGTTGAAGG TTGCGTGGGG AGGTATAAAT 
    ACACATCCTC AGGGCAAAGG CGTAGATAGC GAAAAGGGGG ACGAAAATGT 
    TAAGCCAAAG GAGAATATTG GGATCTTGGA AAGGGCTGCA ACCATGTTCC 
    GTAAGGAGAA AGATCCCACA GCGCCAGAGC TTCCAAAGAC ATTGAAGAAA 
    CTGGACCTGC AATGTTTTCC TGGTGAACAT CTTCCTGAAT GGCTTGAGCC 
    TGATAATCTA CTTAATGTGG AAAAACTCTA CATTAAAGGA GGAATCAAAC 
    TTACTGGATT TGGAAAGTCA CTACCTAGCC AGAATTCGAA ATGCAAAGTT 
    ACCGTTTTAC GTCTGAAGTT TCTTCCAAAA CTAAAAGTGG AGTGGAGGGA 
    TTTGAGCAAA AGGTACTTTC CGGAACTCAA GTTCTTGGAG AAGTATCAGT 
    GCCCTCAAGT TAGTCTCTGC CCCTGCGATG GAATTGGAAT CTGGCGCAAG 
    CCTGAAGAAG ATGAAGTCTA AAGCATCTCA GAACTGAGAG TTTCTCGGTT 
    TATCAAGTTT TCTTCCTCGT TGTCTTTTTC TTTTGTTGTT GTTGTTGTTG 
    TGTGTTTGCT TCCTCATTTC CCATTGATGT CTTTCTGGTT TTGCGTGCAA 
    GTGTTGTTGT TTGTGAACAG TTGAATAATG GAAATTTGCT TTGCTTAAAA 
    AAAAAAAAAA AAGAGCTCTT GGATCCGGCC ATAAGGGCCT GATCCTTCGA

    Gene models with high sequence identity

    1. AT5G45500.2 [+] show detail - RNI-like superfamily protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 9.3e-06
    superfamily RNI-like 1.9e-18

    See the detailed result >

    AT5G45500.2

    Model type
    Protein coding
    Short Description
    RNI-like superfamily protein
    Computational Description
    RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Leucine-rich repeat (LRR) family protein (TAIR:AT5G45520.1).
    Link
    InterPro Scan - TAIR