F15141

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15141

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: F15141

Determination of introduced cDNA(s)

  • RAFL09-30-J23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-30-J23 - Resource: pda08202

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-30-J23 - full reading 
    AACTTCAGAT CCTTTCACCA GCAACACAAG TTATTTTCAA AAGATGATGC 
    CAAATTCTAG ATCGGCGACA ATAACTCCGA CGACAGAATC AACCACCACA 
    ACAACAACAA CAACAACGAC TCTAACGACG TCGTATTGGT GTTACAGTTG 
    TACACGATTC ATCAGCGTTT GGGAAGATCA AGACGCAAAC GCTGGAGTCT 
    TATGTCCTTA TTGCAACGGT GGATTCATCG AAGAGATTGA AGATTCTTCT 
    AATTCCACCG TCGCGGCGAT TCCGGCTTCG ACTCCGGAAG TTAGATCGGT 
    TGAGGAAACA CATAGATCTA TAATTAGACG TCGTAGATCT AATCGCCGGA 
    CGTCCTTTAA TCCGGTAATC GTCTTACACG GCGGAGGAGG AGGAGGAGCC 
    GGTGAGAGAG TTGAGAACGA AGAAGGTGAC GGAGCTACTA GAGAACGACG 
    AGCTTATGAG TTTTATTACG ATGATGGATC TGGTTCAGGT CTAAGACCTC 
    TTCCTGATTC TGTATCTGAG ATCTTGATGG GATCTGGATT CGAACGGTTA 
    CTTGAACAAT TGAGTCAGAT CGAAGCGTCA GGTAACGGAA TCGGTAGATC 
    TGGGAATCCA CCGGCGTCGA AATCAGCGAT TGAATCTTTA CCTAGAGTCG 
    AAATCTCAGA TTGTCATACG AAAGCAGAAG CTAATTGCGC CGTGTGTACG 
    GAGGTTTTCG AAGCCGGAAT CGAAGGTCGT GAGATGCCGT GTAAACACAT 
    ATTTCACGGT GATTGTATTG TTCCATGGCT TTCGATTCGG AATTCGTGTC 
    CTGTGTGTAG ATTTGAGTTA CCTTCAGATC CAATCCAACG GAGTAATGAA 
    GAAGAACATG CCGTTGGGAT GACGATTTGG AGATTACCTG GTGGTGGTTT 
    CGCTGTTGGT AGGTTTAACG CGGGAGTGAG AGAAGGTGAG AGGATATTGC 
    CGGTGGTATT GACGGAGATG GATGGTGGTG GACTTGGTAG TAATGAAGGA 
    CCGAGAAGGA TATCTTGGGT TAGAGCTCAT GAGACACCGG AGATGAGTAG 
    GAATGGTGGT CGTTCTGGTA ATGGTGGTAG ATTGAGAAGA GCTGTTCGTG 
    GAATGGTTTC GTTTATGAGA AGAGTTAGAC CAAGTCGTGG CTCTTCGAAT 
    TCGAATGTTA TTGATTTGGA TAGTGATGGT GAAACTAGAG TTATGAATCG 
    ATCAACTTCG TTGATCAGAA GATTTTTCTG ATGAAACTAG GTGAGATTTT 
    TTTGTTTGTT GATTCAACAA TGTATATATA TTTATTTAGA TGAACTTATT 
    TGG

    Gene models with high sequence identity

    1. AT3G46620.1 [+] show detail - zinc finger (C3HC4-type RING finger) family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 2.4e-12
    HMMPanther RING ZINC FINGER PROTEIN 2.3e-65
    HMMPfam Protein of unknown function DUF1117 1.5e-35
    HMMPfam Zinc finger, C3HC4 RING-type 6.2e-06
    HMMSmart Zinc finger, RING-type 5.7e-06
    superfamily RING/U-box 2.9e-15
    ProfileScan Zinc finger, RING-type 12.165

    See the detailed result >

    AT3G46620.1

    Model type
    Protein coding
    Short Description
    zinc finger (C3HC4-type RING finger) family protein
    Computational Description
    zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to chitin; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Protein of unknown function DUF1117 (InterPro:IPR010543); BEST Arabidopsis thaliana protein match is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G59550.1); Has 8876 Blast hits to 8844 proteins in 271 species: Archae - 0; Bacteria - 6; Metazoa - 2388; Fungi - 760; Plants - 4652; Viruses - 43; Other Eukaryotes - 1027 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR