F15320

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15320

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15320

Determination of introduced cDNA(s)

  • RAFL09-66-H20 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-66-H20 - Resource: pda08642

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-66-H20 - full reading 
    AGAGACTTCT TAAAAACTAT TCAACTCCAT CAAACCTTCT CATATTCTCT 
    GCGATGGCGG ATTCTAGTCC TGCAAGTTTC TTGACTCAAG CCGACGCTTT 
    ACTGAGGAAG AATTTAGTTT TCCAGAAACG GAACATATGG AGCAACATAC 
    GACTCATCAC AATCCCTTTC TTTCTCTGTT TACTTCTCCT TGTTATTCAA 
    ATGCTCTTCG ACACTCAATT CAACGACGTC CATGGTCAAT GTGGCTGCAA 
    CGAGAAAACT TGCGGCTTAA GGTATTCGAC TTCAGAGCAA GCAGCTTTTT 
    GTGCCATTCC TAATCCACCA CAATGGACTC CACTACTTCA GATCCCGGCT 
    CCTGAATACC GAGCCGCGAT CCCATACCCG AGCCATACTT CCCCTGCAAC 
    TTTTCTCTTC ACCGGGAATA ATCAGTCGCT CGGAAATATT CTAATGGGAA 
    ATATGTATAG CAATTCATCT GGATTTGATG GAGATTTAGC CTATTATGTC 
    TTGGGCTCAT CATCTTTCCC TGCATACACC AATCATATGG ACTCCGCTTT 
    CATCTCAGAT CTTCCCATCT ACAACATCCA ACATGAATGC TCACCAAACT 
    CTTCTTTCTC AATCTTAATT CACCAATCAC CTCTTGCTTT CCCTAAAGAG 
    GTAAACTGTG TCCAAGGCTT AAATTTGTGG CGGAATAGTT CTTCGGATGT 
    GAACAACGAG CTTTTCAAGG GTTACCGAAA AGGAAATCCA GACAAGAAGA 
    TCAATGAGTT TGCTGGAGCT TTTGATTTTC AGAACACAAA TGGGAACAAT 
    CTCAATGTTA GTGTTTGGTA CAACTCCACC TACAAGAACG ATACAGTGGT 
    TCGACCGATG GCTCTGATAC GAGTCCCTCG CTTAGTTAAT CTGGCATCTA 
    ATGCATATCT TGAGTTCCTA AAAGGTTCTG AGACAAAGAT ACTCTTTGAG 
    TATGTCAAGG AAATGCCTAA ACCAGAGACT AAACTGAGCT TAGACATCGC 
    CTCTCTAATC GGCCCGCTCT TCTTCACATG GGTCATTCTG TTGTTATTTC 
    CTGTGATCTT AACAACACTG GTGTATGAGA AACAACAGAG GTTAAGAATC 
    ATGATGAAAA TGCATGGACT TGGAGATGTT CCTTACTGGA TAGTTTCATA 
    CACTTATTTT CTCTTGATAT CGATTCTCTA CATGTTGTGC TTTGCGATAT 
    TCGGTTCACT CATCGGGTTA AACTTCTTTA GGCTTAATGA CTATAGTATC 
    CAACTTGTGT TCTTCTTCAT ATGCATAAAT CTTCAAATAT CAGTCGCCTT 
    TTTAGCATCT GCAATGTTTT CAGATGTTAA AACTGCTACA GTTATAGCAT 
    ACATATATGT CTTTGGAACC GGGCTTCTAG GAATCTTTCT TTTCCAATTC 
    TTCTTGGAAG ATCCTCTCTT CCCAAGAGGA TGGATAATAG CAATGGAGTT 
    ATACCCTGGA TTTTCTTTAT ACCGCGGGCT ATATGAGTTA TCACAATCTG 
    CGTTTGCGGG TGATTACCGC GGGATTGATG GAATGAAATG GAGAGATTTT 
    GGTAATGGAA TGAAAGAAGT GACCTGTATC ATGCTCATTG AGTGGCTGTT 
    ACTGCTTGGT TTAGCATATT ACATTGATCA AATCATTTAC TCCAGGAAAC 
    ATCCATTGTT CTTCCTCCTA CAAAGCACTT CCAAGAAGAA ACAACACTTC 
    TCTGACAACA AAATATCCAA AGTTGTTGTA GAGATGGAAA AGCCAGATGT 
    GTGTCGAGAG AGGGAGAAAG TAGAGCAGTG TCTACTTAAA TCAACTAGAG 
    ACTCTGCGGT TTTATGCAAT AATCTCAAGA AGGTGTACTC GGGTAAGGAC 
    GGTAATCCTC AGAAGCTCGC GGTTAGAGGA TTATCTCTTG CTTTACCTCA 
    AGGAGAATGC TTTGGCATGC TTGGTCCTAA TGGAGCAGGC AAAACCTCTT 
    TCATCAACAT GATGACAGGA ATCATCAAAC CATCGTCTGG CACAGCATTT 
    GTCCAAGGTC TTGACATACT AACCGATATG GACCGGATAT ATACAACAAT 
    TGGAGTCTGT CCACAACATG ATCTTCTGTG GGAGAAGTTG AGTGGAAGGG 
    AACATCTACT GTTCTATGGA AGGCTCAAGA ATCTCAAAGG TTCTGTCTTA 
    ACACAAGCTG TCGAAGAGTC GCTTCGCAGT GTCAACCTTT TCCATGGAGG 
    GATTGGTGAC AAACAAGTCA GTAAATACAG TGGAGGGATG AAGAGACGGC 
    TCAGCGTCGC TATTTCTCTT ATAGGAAGCC CCAAAGTTGT TTACATGGAT 
    GAGCCAAGTA CCGGGCTAGA TCCAGCCTCG AGGAAGAGCT TATGGGATGT 
    AGTGAAACGG GCTAAGCGAA AAGGGGCGAT AATACTCACC ACACATTCAA 
    TGGAAGAAGC TGAAATTTTG TGTGACCGTA TAGGAATTTT CGTCGATGGT 
    AGTTTGCAAT GCATTGGCAA TCCAAAGGAG TTGAAGAGTC GATATGGAGG 
    ATCCTATGTA TTGACTGTGA CAACCTCGGA GGAACATGAG AAAGAAGTAG 
    AGCAATTAGT GCATAACATC TCTACGAATG CAAAGAAGAT ATATCGAACC 
    GCGGGGACTC AGAAGTTTGA GCTGCCAAAG CAAGAGGTGA AGATTGGTGA 
    GGTGTTTAAG GCTTTGGAGA AGGCGAAGAC AATGTTTCCA GTAGTTGCTT 
    GGGGACTTGC AGACACAACT CTTGAAGATG TCTTTATAAA GGTTGCTCAA 
    ACTTCTTAAC TAACAACTCT TTTGAATGAT TCCTTCAGAT CAATCTCAAT 
    CTTTTCTATA TCTTATGTCA AGCTCAAAAT CACAAACTAT ATTTCATATA 
    ACTCTCTCTA GCCACTTATG CTCTTAAGAA AATCATTTAT TTCCGTAAAT 
    AGTTAATACG AGCTTTCGAG TCTAAAAAGG GAAACAATGG ATAGACTTCA 
    TTTAGACGT

    Gene models with high sequence identity

    1. AT3G47790.1 [+] show detail - ABC2 homolog 7
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther ABC TRANSPORTER 0
    HMMPanther ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A 0
    Gene3D no description 2.7e-46
    HMMSmart ATPase, AAA+ type, core 1.2e-07
    HMMPfam ABC transporter-like 8.1e-15
    superfamily P-loop containing nucleoside triphosphate hyd 5.3e-54
    ProfileScan ABC transporter-like 18.441
    PatternScan ABC transporter, conserved site 0

    See the detailed result >

    AT3G47790.1

    Model type
    Protein coding
    Short Description
    ABC2 homolog 7
    Curator Summary
    member of ATH subfamily
    Computational Description
    ABC2 homolog 7 (ATH7); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: N-terminal protein myristoylation; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: ABC2 homolog 2 (TAIR:AT3G47740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR