F15349

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15349

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15349

Determination of introduced cDNA(s)

  • RAFL08-13-D04 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL08-13-D04 - Resource: pda07919

    full reading [+] show sequence

    Nucleotide sequence: RAFL08-13-D04 - full reading 
    GTCGTCGCTC CTCTGTAAAA GTTTCTTCTA TTCGACGATT CCTCTCGACG 
    TTATCATATT TCCTCTCCAG GAGCGTGTTT CCAGAGGGGA TGGATTCTGT 
    TCGACGCACT TACACCATTA TGCGAGGTCG TCACATAGAC AAGCGTGTTC 
    CTTCTAAAGA GTTTCTCTCT GCTTTGGATA AAGCTGAAAC TGCAGGTTTT 
    TTGTACCCAC CCTCATAATA GTCATGATTT TACTCTATTG CCTACTTTTT 
    GGTGCACACG GACAGTGTTA TATATTTTAA AGACCACTTC TGATCTTTTT 
    ATTGTATTTG CTCATCAACT CTATATTGCT TGTTTGTGTT TTAGACATAG 
    CATTGTACCT AGATATACCA CTTTTTTCTT GTTGCCTCAA TATCTTGAAA 
    CTTCTTCTGC ATAGACTGAC TCTTGACTTT TCTCAACTCC AGTACGTCTT 
    CCTACTGGGA CGGGAAAAGA CTGCGGGAAT CCTTCCTGGA AGCGATCTCT 
    GCCTCACGTG CTCGTTGCTT CTCTGACTTC GCTTTTATTC GGCTATCATC 
    TCGGGGTTGT TAATGAAACT CTCGAAAGCA TATCAATTGA CCTTGGCTTT 
    AGTGGGAACA CCATAGCTGA AGGTCTTGTG GTTAGCACCT GCTTAGGCGG 
    CGCCTTTATT GGGTCTCTGT TCAGTGGGTT GGTAGCTGAT GGTGTTGGGC 
    GCCGTAGAGC TTTCCAGTTG AGCGCTTTAC CAATGATTGT TGGAGCTTCT 
    GTGAGTGCAT CAACTGAGAG TCTTATGGGC ATGCTCCTGG GAAGGTTTTT 
    GGTCGGAATT GGGATGGGCA TAGGTCCTTC TGTTACAGCT CTCTATGTCA 
    CTGAGGTGTC ACCTGCTTAT GTGAGAGGTA CATATGGGAG TTCTACCCAA 
    ATCGCAACAT GTATTGGACT CTTAGGTTCG CTGTTTGCTG GAATCCCGGC 
    AAAAGATAAC TTGGGCTGGT GGCGCATATG TTTTTGGATA TCCACAGTCC 
    CAGCTGCAAT GCTTGCTGTC TTCATGGAAC TCTGCGTGGA AAGTCCTCAG 
    TGGCTTTTTA AGAGGGGAAG GGCAGCTGAA GCTGAAGCTG TGTTTGAGAA 
    GCTATTGGGA GGGTCGTACG TCAAAGCTGC TATGGCAGAG TTAGTGAAGT 
    CGGATAGGGG AGATGACGCC GATTCAGCCA AATTGTCGGA GTTGCTTTTT 
    GGACGCAGTT TTAGAGTGGT TTTCATTGGA TCTACCCTTT TTGCTTTACA 
    ACAGTTGTCT GGGATAAATG CTGTGTTCTA TTTCTCATCA ACTGTCTTCA 
    AGAAAGCTGG TGTACCTTCA GCCTCTGCAA ACATATGTGT AGGAGTTTGC 
    AACCTCTTAG GATCAACTGT TGCTGTGGTT TTGATGGATA AGCTGGGGAG 
    AAAAGTGTTG CTTATTGGGA GTTTTGCGGG CATGGCAGTA TCGCTGGGTC 
    TCCAAGCAAT AGCATATACT TCGCTTCCTT CGCCCTTTGG AACCTTGTTT 
    CTCTCGGTTG GAGGAATGCT GCTGTTTGTG TTGTCGTTTG CAACTGGAGC 
    GGGTCCTGTT CCAAGTCTTC TCCTGTCTGA GATATGCCCT GGTCGACTTC 
    GAGCAACTGC GTTGGCTGTT TGTCTTGCCG TTCACTGGGT TATAAACTTC 
    TTTGTCGGGC TGCTGTTTCT GAGAATGCTG GAGCAACTAG GTTCGGTGCT 
    TCTAAATGCA ATATTTGGGT TCTTCTGTGT GGTGGCAGTC ATCTTTGTGC 
    AGAAGAACGT GGTTGAGACT AAAGGAAAGA GCCTACAAGA GATAGAAATC 
    AGTCTGCTCT CTTCCACCCA GTGATTGATC TCTTTATTCT GAGAATTCGT 
    ATTATTCTTC TGGCTCTCTT TTTTTCCTTG GAGAGACACA AGTAACGTGT 
    ACCTAATATG GAAGTAGGAG TGAGTAGTAA GTAGGTAAAC AACATGTAAG 
    GAAATGGATA TTATTCATTC GAGTATAGCC AACGTTTCAA AAAAAAAAAA 
    AAAAAAGAAA AAAAAAAAAA AA

    Gene models with high sequence identity

    1. AT1G79820.2 [+] show detail - Major facilitator superfamily protein
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan MFS 41.046
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    PatternScan Sugar transporter, conserved site 0
    HMMPfam General substrate transporter 7.3e-86
    superfamily Major facilitator superfamily, general substrate transporter 4.5e-60
    HMMPanther SUGAR TRANSPORTER (HEXOSE TRANSPORTER) 2.4e-215
    HMMPanther SUGAR TRANSPORTER 2.4e-215
    FPrintScan Sugar/inositol transporter 3.3e-19
    FPrintScan Sugar/inositol transporter 3.3e-19
    FPrintScan Sugar/inositol transporter 3.3e-19
    FPrintScan Sugar/inositol transporter 3.3e-19
    FPrintScan Sugar/inositol transporter 3.3e-19
    HMMTigr Sugar/inositol transporter 2.2e-63

    See the detailed result >

    AT1G79820.2

    Model type
    Protein coding
    Short Description
    Major facilitator superfamily protein
    Computational Description
    SUPPRESSOR OF G PROTEIN BETA1 (SGB1); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G67300.1); Has 34820 Blast hits to 34269 proteins in 2224 species: Archae - 604; Bacteria - 18622; Metazoa - 4518; Fungi - 6808; Plants - 2676; Viruses - 2; Other Eukaryotes - 1590 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR