F15409

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15409

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15409

Determination of introduced cDNA(s)

  • RAFL06-89-E14 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-89-E14 - Resource: pda07786

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-89-E14 - full reading 
    CAAAATCAGC CATGCTGATC CTCTTAGTAG CAATGGTCAT CGCATCATGT 
    GCCACGGCCA TTGATATGTC CGTGGTTTCC TACGACGATA ACAACCGTCT 
    CCATAGCGTT TTCGATGCTG AGGCCTCGTT AATCTTCGAG TCATGGATGG 
    TCAAACATGG GAAAGTGTAC GGGTCCGTTG CCGAGAAGGA ACGGCGTTTG 
    ACGATTTTTG AGGACAACCT CCGTTTTATC AATAACCGGA ACGCTGAGAA 
    TCTCAGTTAT CGGCTTGGTT TGACCGGGTT TGCGGATTTA TCTCTTCATG 
    AGTATAAAGA AGTTTGCCAC GGGGCTGATC CAAGACCTCC TAGGAACCAC 
    GTCTTTATGA CTAGTAGCGA CCGATACAAG ACTAGTGCTG ATGATGTGCT 
    TCCTAAGTCA GTTGATTGGA GAAACGAAGG AGCAGTGACT GAAGTCAAAG 
    ATCAAGGCCA TTGCAGGAGT TGTTGGGCTT TCTCGACTGT GGGAGCAGTG 
    GAAGGCTTAA ACAAGATCGT GACGGGAGAG TTAGTCACTT TGTCTGAGCA 
    AGATTTGATC AATTGTAACA AAGAAAACAA TGGTTGCGGA GGAGGCAAAC 
    TCGAGACTGC CTATGAGTTC ATCATGAAAA ATGGTGGTCT TGGTACCGAC 
    AACGATTATC CTTACAAAGC TGTTAACGGA GTCTGTGATG GCCGCCTCAA 
    GGAAAACAAC AAGAATGTTA TGATTGATGG GTATGAAAAT TTGCCCGCAA 
    ACGACGAATC TGCTCTCATG AAAGCGGTTG CTCACCAGCC TGTGACTGCC 
    GTTATCGATT CCAGTAGCCG AGAGTTTCAG CTTTATGAAT CGGGAGTGTT 
    TGATGGCTCG TGTGGAACAA ACCTAAACCA TGGAGTTGTT GTGGTCGGGT 
    ATGGAACTGA GAATGGTCGT GACTACTGGC TCGTGAAAAA CTCTAGGGGC 
    ATTACATGGG GAGAAGCTGG CTACATGAAG ATGGCTCGAA ACATTGCCAA 
    TCCAAGAGGC TTATGTGGCA TTGCAATGCG AGCTTCATAC CCTCTAAAGA 
    ACTCCTTTTC TACCGATAAA AGCTCCATCG CCTAATAAAA TGAGCTAAAT 
    GTATGTTATG CAAAGGATCC AGTGAGCCAG CAACCTATTC GATTGTGAAA 
    TGAAAAATAA TGTAGTCGAT GGGTTTTGTT TTGTAATATA TTTTGGATTT 
    GTATGGAGGG CAATGTTTGA AGTTTGTATA ATATTTATGG ATATTTCGTT 
    AGGCTCTAAT TATGAATGCC TTCTTTTTAG GAA

    Gene models with high sequence identity

    1. AT4G11310.1 [+] show detail - Papain family cysteine protease
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPanther CYSTEINE PROTEASE 2.2e-190
    HMMPanther Peptidase C1A, papain 2.2e-190
    HMMSmart Proteinase inhibitor I29, cathepsin propeptide 4.3e-23
    HMMSmart Peptidase C1A, papain C-terminal 2.2e-109
    HMMPfam Peptidase C1A, papain C-terminal 1.4e-75
    HMMPfam Proteinase inhibitor I29, cathepsin propeptide 6.1e-15
    superfamily Cysteine proteinases 1.8e-102
    FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
    FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
    FPrintScan Peptidase C1A, papain C-terminal 3.3e-10
    Gene3D no description 2.2e-106
    PatternScan Peptidase, cysteine peptidase active site 0

    See the detailed result >

    AT4G11310.1

    Model type
    Protein coding
    Short Description
    Papain family cysteine protease
    Curator Summary
    cysteine proteinase precursor-like protein
    Computational Description
    Papain family cysteine protease; FUNCTIONS IN: cysteine-type peptidase activity, cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, N-terminal protein myristoylation; LOCATED IN: cell wall; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Papain family cysteine protease (TAIR:AT4G11320.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR