F15413

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Seed::deep red

Original: F15413

Determination of introduced cDNA(s)

RAFL09-70-M13 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-70-M13 - Resource: pda17816

full reading [+] show sequence

GAGCAGCGGT CTAGTCTAAC GCAAAATCCG TTTCGTCGTC TTCCTCGCTT 
TACTTTTCAA TCTCCTCCTT CTCCATTAAT CATCTCTTTC TCTCTCTCAC 
GGATTCGTAA GTTAATCTCA GTGCTTCTCC GTCATCTTCG CATTATTGGT 
TCTTCCTTTT TCCCTGTAAG CTCGACACGT GGATTATTCC TCTGCTTTTT 
TTGTTTTCCC TTTTCGTGAA GATTCGTTTC CTGTATCTCC GTGAAGACTT 
GATGGAGTTA GTTTCTTAAA GTAGCTCCTT CTTAGATCCG AGTTTCGATT 
TGCTTCACTG GTGAAGAATT AGTGATTGAT TCAACTAGAT ACTATCGATT 
TCGTTGGATT TGTACTGAAA ACTTGGCTGA TTTTGTTGAT TCTGTCTTGC 
TGGTGAAGTC TCAAGCTACT TCGTGATTAG AGGAGGAGAT CTGGATTTCT 
AGTTTTAGCA ATTCATTTGA CTTCCGAGTT TTCCAGAATC ATTGAAGTGT 
TAGGCTTACT TGATTCAGAT TCAGAACATA GCTTTAGATA ACGTTAGAAG 
CAGAATCAGA ATCTGCAAAT CGGCTCTTTA GATTGCTGCT ACTAGAAATT 
TGAAATTAGC TTTTGGTAGT GTTAAGGATG CAGAATAGGA TTGTACAGTT 
GGAAGAAGGA AAAGAAAATG GAATCACAGT TCGATCAGGG CATTATAAAG 
GATTTCCATC GAAACTGCTA CTTCTGCTAG GGTTGTTTCT TACATTTTCT 
GTTACTGTCT TCATCATTAG TGTATCTACT ATCAAGTATA CTGGAATACA 
AAGTGTAGTA ACCACAGTCA CTTCAAGCTT TGTGCCATGC CGTGAGGGGG 
AACCGAATAG TTTGAGTAAA TGGATACAAC CTCCTGCGGT TTTGATGCAT 
AACATGAGCG ATGAAGAGCT TCTTTGGCGT GCTTCTTTTT GGCCTCGTAG 
AAAAGAATAT CCGTTTAAAC GGGTTCCAAA GGTTGCGTTT ATGTTCTTGA 
CTAAAGGCCC CTTACCGCTT GCTTCGCTTT GGGAGAGGTT CTTGAAGGGT 
CACAAAGGGC TTTACTCGGT TTACCTTCAT CCACACCCTT CTTTTACAGC 
CAAGTTTCCA GCTAGCTCTG TTTTCCACCG GAGGCAAATT CCAAGCCAGG 
TTGCAGAATG GGGGAGAATG TCCATGTGCG ATGCAGAGAA GCGGCTTCTT 
GCCAACGCCC TGCTTGATGT GTCCAACGAA TGGTTTGTTC TCGTCTCAGA 
GTCATGCATT CCACTCTACA ACTTCACAAC CATTTACAGC TACTTAAGCC 
GATCAAAACA CAGCTTCATG GGTGCTTTTG ATGACCCTGG ACCGTTTGGG 
CGTGGCCGCT ACAACGGGAA CATGGAACCT GAAGTTCCCC TTACCAAATG 
GCGAAAAGGG TCTCAATGGT TTGAGGTTAA CCGGGACCTG GCAGCTACCA 
TTGTCAAAGA CACATTGTAT TACCCGAAAT TCAAAGAGTT CTGCAGGCCT 
GCTTGCTATG TGGACGAGCA TTACTTCCCA ACAATGTTGA CGATTGAGAA 
ACCAACAGTC TTGGCTAACC GGAGCTTGAC ATGGGTGGAC TGGTCGAGGG 
GCGGTCCCCA CCCAGCTACG TTTGGGCGAT CGGACATTAC AGAAAACTTC 
TTTGGAAAAA TCTTTGATGG AAGAAACTGC AGTTACAATG GTCGCAACAC 
TTCCATGTGT TATCTCTTTG CGAGGAAGTT TGCTCCGAGT GCTTTGGAGC 
CTTTGCTTCA CATTGCTCCC AAGATTCTTG GATTTTGAGT AGTTTAGTTA 
TGTCTCTGAA GTCTGAACCT CTTGACATCA AATATTTTAT TTTGTTTGTT 
GTGATACTAG TTTGGAAGAA ATGAGATTTT AGTAGAGAGA ACTAGGTTGC 
ACGACAGGAT AGTCATATGT AAACTTTATA TTTCAAAGAA TTACTATGCA 
TAGATCAAAT AGTCTTCTAC TCTTTGGGAC TATCTTTTCA GATGCATTAT 
TGAATCACAA ATTTGTTTTC TCCAAAAAAA AAA

Gene models with high sequence identity

AT5G11730.1 [+] show detail - Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
E-value: 0; Score: 100.00

InterPro Scan Digest

See the detailed result >

AT5G11730.1

Model type: Protein coding
Short Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Computational Description: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Core-2/I-Branching enzyme (InterPro:IPR021141); BEST Arabidopsis thaliana protein match is: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (TAIR:AT5G25970.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR