F15433

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15433

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15433

Determination of introduced cDNA(s)

  • RAFL06-09-F24 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-F24 - Resource: pda02937

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-F24 - full reading 
    ACCAACCTGA TCATCATCAA AACCATTTCA TCCGTAGTGG TCAATGGCGG 
    CTTCTCCGTT GGTGGTTCAG AAAACAGAGG AGGAGTGGCG TGCGGTTCTT 
    TCTCCGGAGC AGTTTCGTAT TCTTCGTCAA AAAGGCACTG AAAAGCCAGG 
    AACTGGAGAA TATGACAAGT TTTTCGAGGA AGGAATCTTC GATTGCGTAG 
    GATGCAAGAC TCCTCTTTAT AAATCAACCA CGAAGTTCGA TTCCGGATGT 
    GGCTGGCCAG CTTTCTTTGA AGGACTCCCT GGTGCCATAA ACCGAACCCC 
    TGATCCAGAT GGGAGAAGAA CTGAGATCAC TTGTGCTGCG TGCGATGGAC 
    ATTTAGGCCA TGTTTTCAAA GGAGAAGGTT ACGGTAATCC AACCGATGAA 
    CGTCATTGCG TTAACAGTGT TTCGATCAGT TTTAACCCGG CAAAATCTTC 
    CTCTATAATC TGAGGATATG ATTGATCGAT CATACAACAT CTTCTAATCA 
    GATTGTGTTG TTAAAATTGT CATCATGTAG TGAATATGCA CTTTCTGTGG 
    TGGTCAATAT AATGCAACAA ATAATAAGAC TCATTAGATA TTGGATGGTT 
    ACTGGTTTCT CTTAATATGT TATAGAACAT TTAATAACGA TTTAATTATC 
    TAAGGGATCA TTACTAGTGT TTCCT

    Gene models with high sequence identity

    1. AT4G04830.1 [+] show detail - methionine sulfoxide reductase B5
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Mss4-like 1.2e-48
    HMMTigr Methionine sulphoxide reductase B 6.3e-44
    HMMPfam Methionine sulphoxide reductase B 6.8e-54
    HMMPanther METHIONINE SULFOXIDE REDUCTASE 1.6e-57

    See the detailed result >

    AT4G04830.1

    Model type
    Protein coding
    Short Description
    methionine sulfoxide reductase B5
    Computational Description
    methionine sulfoxide reductase B5 (MSRB5); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B4 (TAIR:AT4G04810.1); Has 8417 Blast hits to 8406 proteins in 2250 species: Archae - 78; Bacteria - 4939; Metazoa - 269; Fungi - 135; Plants - 208; Viruses - 1; Other Eukaryotes - 2787 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR