F15440

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15440

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15440

Determination of introduced cDNA(s)

  • RAFL09-68-P22 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-68-P22 - Resource: pda06633

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-68-P22 - full reading 
    GACTTCAGTG GCGGCGCATT CAGAGATTCA AACTCAGAGA AAATGGTGGC 
    GACAGGCTTA TTCGTGGGGC TAAACAAAGG ACACGTTGTT ACCAAACGCG 
    AGCAACCTCC TCGCCCTAAC AACAGAAAAG GGAAAACAAG CAAAAGGACT 
    ATTTTTATCA GGAATCTCAT CAAGGAAGTT GCGGGTCAAG CTCCCTATGA 
    GAAGAGGATC ACTGAGCTTT TGAAGGTTGG TAAAGACAAG AGAGCTCTTA 
    AAGTTGCCAA GCGAAAGTTG GGAACTCACA AGAGAGCTAA ACGAAAGAGA 
    GAGGAGATGT CCAGTGTTCT CCGCAAGATG AGGTCTGGTG GTGCTGGTGC 
    ATCCGAGAAG AAGAAGTGAT GCGCTGACTC TGGTTCAGCG CTCTGTTTCT 
    TCTAAACCAG TTTTCTGTTT TTTGAATTTT TTGCAGTACC TTGTGTTTCC 
    TTTGGATATT TTGTAGCAGA GATAATTAAA TGTTAAAACG AAACCATTAT 
    GACT

    Gene models with high sequence identity

    1. AT5G02450.1 [+] show detail - Ribosomal protein L36e family protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L36e 0
    HMMPfam Ribosomal protein L36e 2.9e-42
    HMMPanther Ribosomal protein L36e 1.4e-58

    See the detailed result >

    AT5G02450.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L36e family protein
    Computational Description
    Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 754 Blast hits to 753 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR