F15449

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15449

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • epinastic (PATO:0000945)
    (Cauline leaf::Shape::epinastic)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15449

Determination of introduced cDNA(s)

  • RAFL05-10-E01 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL05-10-E01 - Resource: pda01023

    full reading [+] show sequence

    Nucleotide sequence: RAFL05-10-E01 - full reading 
    ATCGCGCGCT TTGTCGCTTG AGCATCCCCT GCGCAAATTA TCCTCCTCCG 
    CCGTCGCATA ACCGGCGCAC ATTAGTGAAA TCGGAAAAAT CCGTCTCTCC 
    TCCTTCGTAA TGGCGTCGAC AGTCTCAGTT CAACCGGGTC GGATCCGGAT 
    CCTAAAGAAA GGCTCATGGC AACCGTTGGA TCAAACGGTG GGTCCCGTCG 
    TTTACTGGAT GTTCAGAGAT CAACGGTTGA AAGATAACTG GGCGTTAATC 
    CACGCCGTTG ATCTGGCAAA CAGAACCAAC GCGCCGGTGG CCGTCGTTTT 
    CAATCTGTTC GATCAATTTC TGGACGCAAA AGCGAGGCAA TTAGGGTTTA 
    TGTTAAAGGG TTTGCGTCAG CTTCACCACC AAATCGATTC TCTCCAAATT 
    CCGTTTTTTC TCTTACAGGG AGATGCAAAG GAGACAATCC CTAATTTCCT 
    CACAGAATGT GGAGCTTCAC ATCTGGTTAC TGATTTCTCT CCTTTACGGG 
    AAATCCGGCG TTGTAAAGAT GAGGTTGTCA AGAGAACGAG TGATTCATTA 
    GCGATACATG AAGTTGATGC TCACAATGTA GTTCCAATGT GGGCTGCTTC 
    GAGTAAATTG GAGTACAGTG CTAGAACAAT TAGGGGTAAG ATCAACAAGC 
    TACTACCTGA TTACCTCATT GAGTTTCCTA AACTTGAGCC GCCGAAGAAG 
    AAATGGACGG GGATGATGGA TAAGAAGCTT GTTGATTGGG ATAGCCTCAT 
    TGATAAAGTT GTAAGGGAGG GTGCAGAAGT TCCTGAAATT GAATGGTGTG 
    TGCCTGGAGA AGATGCAGGG ATTGAAGTAT TGATGGGGAA TAAAGATGGT 
    TTTTTGACGA AGAGGTTGAA GAATTATTCA ACTGACCGGA ATAATCCTAT 
    AAAGCCGAAA GCACTCTCTG GTCTCTCTCC TTATCTACAT TTCGGGCAGG 
    TATCAGCTCA GCGTTGTGCC TTGGAGGCGC GTAAAGTCCG GAGTACTTCC 
    CCTCAGGCGG TAGACACATT CTTGGAAGAA TTGATTGTGC GAAGAGAACT 
    CTCCGACAAT TTTTGCTATT ATCAACCTCA TTATGATTCT TTGAAGGGAG 
    CTTGGGAGTG GGCACGCAAG TCACTAATGG ATCATGCTTC AGATAAGAGG 
    GAACACATTT ACTCGTTGGA GCAGTTAGAG AAGGGACTGA CAGCAGATCC 
    TTTAGAGATG GTTTATCAAG GGAAAATGCA CGGTTTCATG CGAATGTATT 
    GGGCAAAGAA GATTCTAGAA TGGACCAAGG GACCTGAAGA GGCTCTTTCA 
    ATATCCATCT ATCTAAATAA CAAGTATGAG ATTGATGGTC GTGACCCGAG 
    TGGATATGTT GGGTGCATGT GGTCTATATG TGGCGTTCAT GATCAGGGAT 
    GGAAAGAGAG GCCGGTTTTT GGGAAGATAC GGTACATGAA CTACGCGGGT 
    TGCAAACGGA AATTCAATGT GGATAGTTAC ATCTCTTATG TCAAGAGTTT 
    GGTGTCAGTA ACAAAGAAGA AGAGGAAAGC TGAAGAACAG CTCACCAGAG 
    ACTCTGTTGA TCCCAAGATA ACTATTGTTT AGGTTAACTT TGAATGCCTT 
    GGTATTGTTA CTTGTTAGAC TACTTTGCCC TGTGTTGGGC ATTTTTATAT 
    TCAACGTATT CAGATCCAAA AAAAAAAAAA AAA

    Gene models with high sequence identity

    1. AT1G12370.1 [+] show detail - photolyase 1
      E-value: 0; Score: 99.94

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam DNA photolyase, N-terminal 1.1e-31
    HMMPfam DNA photolyase, FAD-binding/Cryptochrome, C-terminal 2e-28
    HMMTigr DNA photolyase, class 2 0
    superfamily DNA photolyase, FAD-binding/Cryptochrome, C-terminal 7.4e-58
    superfamily DNA photolyase, N-terminal 2.1e-50
    Gene3D Rossmann-like alpha/beta/alpha sandwich fold 3.3e-21
    Gene3D no description 2.6e-06
    PatternScan DNA photolyase, class 2 0
    PatternScan DNA photolyase, class 2 0
    HMMPanther DNA photolyase, class 2 2.9e-144

    See the detailed result >

    AT1G12370.1

    Model type
    Protein coding
    Short Description
    photolyase 1
    Curator Summary
    encodes an amino acid sequence with significant homology to the recently characterized type II photolyases. The uvr2-1 mutant is unable to remove CPDs in vivo, and plant extracts lack detectable photolyase activity , is sensitive to UV-B and is an allele
    Computational Description
    photolyase 1 (PHR1); CONTAINS InterPro DOMAIN/s: Rossmann-like alpha/beta/alpha sandwich fold (InterPro:IPR014729), DNA photolyase, N-terminal (InterPro:IPR006050), DNA photolyase, FAD-binding/Cryptochrome, C-terminal (InterPro:IPR005101), DNA photolyase, class 2 (InterPro:IPR008148); Has 1792 Blast hits to 1788 proteins in 474 species: Archae - 23; Bacteria - 644; Metazoa - 122; Fungi - 53; Plants - 107; Viruses - 39; Other Eukaryotes - 804 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR