F15538

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15538

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15538

Determination of introduced cDNA(s)

  • RAFL14-08-A09 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL14-08-A09 - Resource: pda18138

    full reading [+] show sequence

    Nucleotide sequence: RAFL14-08-A09 - full reading 
    GAGAGCTTTG ACAAAAAAAA AGACGAAGAG AAAAATGTCC ATTAGAGCTC 
    AAGAAATTCA AACCCTTGAA GATGGGAAAA CAGAGGAATT GGTAGTAGGA 
    GACGATGGTG TTCTTATAGA GTTGAAGAAG CTCGAGAAGA GCTCGCGTCG 
    AATTCGTTCG AAGATTGGAA TGGAAGCGAG TCTCGATTCC GTTTGGAGCG 
    TATTGACTGA TTACGAGAAG CTATCTGATT TCATTCCAGG TCTTGTTGTT 
    AGCGAATTGG TTGAGAAAGA AGGCAATCGT GTTCGTCTTT TCCAGATGGG 
    ACAGCAGAAC TTAGCATTGG GACTTAAGTT CAATGCCAAA GCTGTTCTAG 
    ATTGTTACGA GAAAGAGCTT GAGGTTCTGC CACATGGGAG GAGACGTGAG 
    ATTGATTTTA AGATGGTTGA AGGAGATTTT CAGTTGTTTG AAGGCAAATG 
    GTCCATCGAA CAACTCGACA AAGGGATTCA TGGGGAGGCT TTGGATTTAC 
    AGTTTAAAGA TTTTCGGACG ACGCTTGCAT ACACGGTGGA TGTAAAACCG 
    AAGATGTGGT TACCGGTGCG GCTAGTCGAA GGAAGATTGT GCAAAGAGAT 
    AAGAACTAAT CTGATGAGTA TCCGAGATGC AGCACAGAAA GTTATTGAAG 
    GTGTTATTCA TGATCTTTGA GTTTTTTTTC TTTAAGCCAA GCTGAGGTAG 
    TGTTAATATA GATACAAGAT AAGCCTATAT AGTTTTTTTT TTGTGTATTT 
    GAAAAGCTTA TGTAATTGGT TCTACATACA CGTTGTTATC AATTGTATAT 
    TCTGAATCTT TAGGCTTTGA ATATACCAAG TTTTGTTAGT TAAAAAAAAA 
    A

    Gene models with high sequence identity

    1. AT4G01650.2 [+] show detail - Polyketide cyclase / dehydrase and lipid transport protein
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    See the detailed result >

    AT4G01650.2

    Model type
    Protein coding
    Short Description
    Polyketide cyclase / dehydrase and lipid transport protein
    Computational Description
    Polyketide cyclase / dehydrase and lipid transport protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Streptomyces cyclase/dehydrase (InterPro:IPR005031); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G08720.1); Has 410 Blast hits to 381 proteins in 74 species: Archae - 0; Bacteria - 144; Metazoa - 0; Fungi - 0; Plants - 100; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR