F15623

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15623

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15623

Determination of introduced cDNA(s)

  • RAFL06-09-L23 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL06-09-L23 - Resource: pda02955

    full reading [+] show sequence

    Nucleotide sequence: RAFL06-09-L23 - full reading 
    AACTTTCGTT TCCACTTCAG ACCGATCTCA TAATTTGATC GCAAAACTGA 
    TCAAATAGCG TAAAATTGAA ATTCAAATTT TCGCCGGAGC TCCGTCGGAT 
    AAAACAATAA GCGACGTGCG GCGATGGAAT CTCACGGTTC CGGTCTCCGG 
    CGAGTTCTGT TATTGTCGTT CTGTGTCGCT GGGATCTGGG CAGCTTACAT 
    ATACCAAGGC ATTCTTCAAG AGACCTTGTC GACGAAGAAA TTTGGTGAAG 
    ATGGGAAGAG ATTCGAGCAT CTTGCATTTC TGAATTTGGC TCAGAATGTA 
    ATCTGCTTGG TTTGGTCTTA TATAATGATT AAGCTCTGGT CCAACGGAGG 
    TTCTGGTGGA GCCCCATGGT GGACGTATTG GAGTGCTGGC ATTACTAATA 
    CCATTGGTCC TGCTATGGGC ATTGAAGCTT TAAAGTATAT TAGTTACCCA 
    GCTCAGGTCC TTGCAAAATC TTCCAAAATG ATTCCAGTTA TGCTGATGGG 
    CTCCTTAGTT TATGGCATAA GATACACTTT GCCTGAGTAT CTTTGCACCT 
    TTCTTGTTGC CGGAGGAGTA TCTATGTTTG CCCTTCTTAA GACAAGCTCT 
    AAAACCATCA GCAAGCTAGC ACATCCCAAT GCACCCCTTG GTTACGGGCT 
    TTGCTTCTTA AACCTTGCCT TTGATGGATT CACAAACGCA ACCCAGGATT 
    CCATTACCGC AAGGTACCCC AAAACTAACG CATGGGACAT AATGCTGGGA 
    ATGAATTTAT GGGGAACCAT ATACAACATG GTCTACATGT TTGGATTGCC 
    ACATGGGAGC GGATTTGAAG CTGTGCAGTT CTGCAAGCAA CACCCTGAGG 
    CAGCATGGGA CATTCTTATG TACTGTTTAT GCGGTGCAGT AGGCCAAAAC 
    TTCATCTTCT TGACAATAAG CAGATTCGGG TCTCTAGCTA ACACGACCAT 
    AACCACAACC AGGAAGTTTG TAAGCATCGT GGTATCTTCA GTTTTGAGCG 
    GGAATCCGTT ATCTTCCAAA CAATGGGGAT GTGTGTCGAT GGTGTTCGGT 
    GGATTGTCTT ACCAAATTTA CCTGAAATGG AGGAAGCTGC AGAGAATGCA 
    GAAGAAGAAA AAGGCCTGAA GCTGAGATTG GGGATCAAAA TATTTAATTC 
    TTCAAGAAAA TTGTTTTTGA TTTGGAAACT TTTTACTTCC AAATATGTCT 
    GAAAGTTAGA GAGAAGAAAG CTTAGTCCAT TAGCAAAATG TAAACTAATG 
    CATTAGAAGA AACTTATATA TATCAAACCA AAAGACAAAT CATATATTTC 
    CACC

    Gene models with high sequence identity

    1. AT1G14360.1 [+] show detail - UDP-galactose transporter 3
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam UAA transporter 3.8e-94
    superfamily Multidrug resistance efflux transporter EmrE 0.00035
    superfamily Multidrug resistance efflux transporter EmrE 0.00062
    HMMPanther UDP-GALACTOSE TRANSPORTER B1 (SLC35B1) 5.8e-149
    HMMPanther UDP-GALACTOSE TRANSPORTER-RELATED 5.8e-149

    See the detailed result >

    AT1G14360.1

    Model type
    Protein coding
    Short Description
    UDP-galactose transporter 3
    Computational Description
    UDP-galactose transporter 3 (UTR3); FUNCTIONS IN: pyrimidine nucleotide sugar transmembrane transporter activity; INVOLVED IN: transmembrane transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: UAA transporter (InterPro:IPR013657); BEST Arabidopsis thaliana protein match is: UDP-galactose transporter 1 (TAIR:AT2G02810.1); Has 1048 Blast hits to 1040 proteins in 233 species: Archae - 0; Bacteria - 0; Metazoa - 487; Fungi - 154; Plants - 232; Viruses - 0; Other Eukaryotes - 175 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR