F15643

RIKEN Arabidopsis full-length cDNA overexpressed Arabidopsis lines

Original: F15643

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: F15643

Determination of introduced cDNA(s)

  • RAFL09-67-L19 - RIKEN Arabidopsis Full-length cDNAs - Original: RAFL09-67-L19 - Resource: pda06594

    full reading [+] show sequence

    Nucleotide sequence: RAFL09-67-L19 - full reading 
    CTCTTCTTCT CTCTTCCTCA TATTTATTAC TCTCTCTTTC ACAAACACAC 
    AGAAAATAAA TAAATAAAAT TAATTAATGT GAGAAAATCA ATTCAAAAAT 
    TTGGACATAC GTATCATCTG AGAGAAGAAG GGTTTGGTGA ATACCGGCGG 
    GTGGAACCGA CGGCGATGGC GAAGACCGGT GTTTTCGATT CGGATCCGAC 
    GGCGATTGCT AAAGCCAAGG AACTGAAGCG TGAGATGAAG AAGTTGCTGA 
    TTAAGATCGA TGACGAAGAT GATTTGGGTG TTCAGACGAT TGATCAGTTA 
    CAGGACGCTT TGTCTGCGTT GAGAGAAGCG ACGATGAGGA AGATGGCGAA 
    ATCTTCCTCG TTAGAGATGC TCGAGACTGT GTCTTGTCCT GAGGAGTTTC 
    GTTGTCCTCT CTCTAATGAG CTTATGAGGG ATCCCGTCGT TTTGGCTTCT 
    GACATACGAC AAGTTATTTA TCCAGAAATG GTTGAGCTCA GGGAACAGAA 
    CATGTCCCAA GACTCAGCAA GTTCTGCCTC ACACGGCTTT AACACCTAAT 
    CTCTTAATCC GTGAAATGAT CTCGAAATGG TGCAAGAAGA ACGGGCTTGA 
    GACGAAGAGC CAATATCATC CCAACCTTGT AAATGAAGAT GAAACTGTGA 
    CAAGATCAGA TCGTGAGATT TTCAATTCCT TGCTCTGTAA AGTCTCTTCT 
    TCGAACCTTC AAGATCAAAA ATCAGCTGCC AAGGAGCTAA GACTTCTGAC 
    CAGGAAAGGC ACTGAGTTCC GAGCTCTTTT TGGCGAATCT CCGGATGAGA 
    TCACCAGGTT GGTGAATCCC TTGTTACACG GGTCAAACCC AGATGAGAAG 
    CTTCAAGAAG ATGTGGTTAC AACATTGTTG AACATATCAA TACATGATGA 
    CAGCAACAAG AAGCTCGTCT GCGAAAATCC TAATGTGATT CCTCTCCTTA 
    TCGATGCATT GAGGCGTGGA ACAGTCGCCA CGAGAAGCAA TGCAGCTGCA 
    GCGATCTTCA CTCTGTCAGC TCTCGATTCA AACAAAGTAC TTATAGGGAA 
    GTCCGGAATC CTGAAACCGC TTATCGATCT CCTAGAAGAA GGGAATCCAT 
    TAGCTATCAA AGACGTAGCT GCAGCGATCT TCACTCTTTG TATAGCCCAT 
    GAGAACAGGA GTAGAGCTGT GAGAGACGGA GCTGTTAGGG TTTTAGGTAA 
    GAAAATCTCG AATGGGTTGT ACGTTGATGA GCTTTTAGCT ATATTGGCAA 
    TGCTTGTTAC TCACTGGAAG GCTGTGGAGG AATTGGGTGA GCTCGGTGGG 
    GTTTCATGGT TGCTGAAGAT AACTCGAGAG AGCGAGTGCA AGCGAAACAA 
    AGAGAATGCG ATAGTGATAC TGCATACTAT ATGTTTCAGC GACAGGACAA 
    AGTGGAAGGA GATCAAAGAA GAGGAGAATG CTCATGGAAC GATAACAAAG 
    CTTTCGCGTG AAGGAACTTC AAGGGCGCAG AGGAAAGCAA ACGGGATATT 
    GGACAGACTG AGAAAAGCTA TGAATCTCAC TCATACAGCC TGAGAAAAGC 
    CTTGAAATCT GCAATGTAAA TTACCTAAAA TCTTGTTTCT TTTTTTTACT 
    TTATTTGGCT GTAAGAATTT TTGTAAATTA TTCATATCTT TAGGATCTGA 
    ATGGTTATTG GTTTTCGTG

    Gene models with high sequence identity

    1. AT3G07360.3 [+] show detail - plant U-box 9
      E-value: 0; Score: 100.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther VACUOLAR PROTEIN 8-RELATED 0.00021
    HMMPanther BETA CATENIN-RELATED ARMADILLO REPEAT-CONTAIN 0.00021
    Coil coiled-coil 0
    Gene3D no description 5.9e-12
    Gene3D Armadillo-like helical 2.3e-28
    HMMSmart U box domain 2.8e-07
    HMMPfam U box domain 3.8e-06
    HMMPfam U box domain 2.2e-08
    superfamily Armadillo-type fold 1.2e-46

    See the detailed result >

    AT3G07360.3

    Model type
    Protein coding
    Short Description
    plant U-box 9
    Curator Summary
    The protein that is predicted to be encoded by this gene model lacks the U-box domain identified in the AT3G07360.1 gene model.
    Computational Description
    plant U-box 9 (PUB9); CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT5G18320.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR